PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00035521001

Common Name

GSBRNA2T00035521001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 297aa MW: 34095 Da PI: 6.5033

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00035521001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	109	128	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ GSBRNA2T00035521001 109 FSCSVCNKTFNRFNNMQMHM 128 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.09E-5	101	131	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.4E-6	109	128	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.263	109	136	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	111	131	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.3E-4	167	202	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MEVLFSLSSL SLSISLSPPS PRLWIGRLMN KNSWPTIPIN IKLSSNHEID QNLLLTNPND 60 VTVSLHIGPP VSDKETNTHE NNQEGLTARQ QGQYWVPSLS QILVGPTQFS CSVCNKTFNR 120 FNNMQMHMWG HGSQYRKATM LYCYCCAEGC KNNIDHPRAK PLKDFRTLQT HYKRKHGAKP 180 FHCRKKCEKT FAVRGDWRTH EKNCGKLWFC VWGSDFKHKR SLKDHVRAFG DGHAAHTVGD 240 RVVAIGHGEE DDDGDDDDDD DMEEEEEEDE QNIEEVDVDG EKNYEYGHFR RNTQIF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269\|PubMed:18643975, ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00035521001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ311809	2e-90	AJ311809.1 Arabidopsis thaliana mRNA for WIP6 protein (At1g13290 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013646508.1	1e-131	zinc finger protein WIP6-like
Swissprot	Q9FX68	1e-131	ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBL	A0A078GN79	0.0	A0A078GN79_BRANA; BnaA09g46350D protein
TrEMBL	A0A3P5YRN8	0.0	A0A3P5YRN8_BRACM; Uncharacterized protein
STRING	fgenesh2_kg.1__1438__AT1G13290.1	1e-130	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-129	C2H2-like zinc finger protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]