PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035672001
Common NameGSBRNA2T00035672001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 159aa    MW: 18096.7 Da    PI: 9.5271
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035672001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+ + + +G g W+t +++ g++R++k+c++rw +yl
  GSBRNA2T00035672001 15 KGAWTPEEDQKLISYLNNHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 62
                         79********************************************97 PP
2Myb_DNA-binding543.7e-1768112147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +T++E++ ++ +++++G++ W+ Iar ++ gRt++++k++w+++
  GSBRNA2T00035672001  68 RGEFTEDEELSIISLHALHGNK-WSDIARGLP-GRTDNEIKNYWNTH 112
                          899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8171062IPR017930Myb domain
SuperFamilySSF466897.11E-2912109IPR009057Homeodomain-like
SMARTSM007171.8E-121464IPR001005SANT/Myb domain
PfamPF002494.7E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-241669IPR009057Homeodomain-like
CDDcd001671.13E-81762No hitNo description
PROSITE profilePS5129425.36863117IPR017930Myb domain
SMARTSM007171.7E-1567115IPR001005SANT/Myb domain
PfamPF002499.1E-1668112IPR001005SANT/Myb domain
CDDcd001671.65E-1070113No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2670118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MVRTPCCKPE LGLKKGAWTP EEDQKLISYL NNHGEGGWRT LPEKAGLKRC GKSCRLRWAN  60
YLRPDIKRGE FTEDEELSII SLHALHGNKW SDIARGLPGR TDNEIKNYWN THIKKRLIKK  120
GVDPVTHKSL ISETSKSENL PEILNNQNII QTIITINE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28131175108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in vegetative parts of the plant, mainly in mature rosette leaves and in trichomes. Detected in roots, but not in mature flowers or siliques. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor positively regulating indolic glucosinolate biosynthetic pathway genes. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035672001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by touch or wounding. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6701191e-166KJ670119.1 Brassica napus MYB transcription factor 51 (MYB51.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149330.11e-112PREDICTED: transcription factor MYB51
RefseqXP_013723281.11e-112transcription factor MYB51-like
SwissprotO497824e-94MYB51_ARATH; Transcription factor MYB51
TrEMBLA0A078GQ191e-112A0A078GQ19_BRANA; BnaA06g12690D protein
TrEMBLM4EA591e-110M4EA59_BRARP; Uncharacterized protein
STRINGBra025666.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18570.19e-96myb domain protein 51
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Benstein RM, et al.
    Arabidopsis phosphoglycerate dehydrogenase1 of the phosphoserine pathway is essential for development and required for ammonium assimilation and tryptophan biosynthesis.
    Plant Cell, 2013. 25(12): p. 5011-29
    [PMID:24368794]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Frerigmann H,Gigolashvili T
    MYB34, MYB51, and MYB122 distinctly regulate indolic glucosinolate biosynthesis in Arabidopsis thaliana.
    Mol Plant, 2014. 7(5): p. 814-28
    [PMID:24431192]
  5. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  6. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  7. Peskan-Berghöfer T, et al.
    Sustained exposure to abscisic acid enhances the colonization potential of the mutualist fungus Piriformospora indica on Arabidopsis thaliana roots.
    New Phytol., 2015. 208(3): p. 873-86
    [PMID:26075497]
  8. Frerigmann H,Glawischnig E,Gigolashvili T
    The role of MYB34, MYB51 and MYB122 in the regulation of camalexin biosynthesis in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 654
    [PMID:26379682]
  9. Frerigmann H, et al.
    Regulation of Pathogen-Triggered Tryptophan Metabolism in Arabidopsis thaliana by MYB Transcription Factors and Indole Glucosinolate Conversion Products.
    Mol Plant, 2016. 9(5): p. 682-695
    [PMID:26802248]
  10. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  11. Xu J, et al.
    Pathogen-Responsive MPK3 and MPK6 Reprogram the Biosynthesis of Indole Glucosinolates and Their Derivatives in Arabidopsis Immunity.
    Plant Cell, 2016. 28(5): p. 1144-62
    [PMID:27081184]
  12. Miao H, et al.
    Glucose enhances indolic glucosinolate biosynthesis without reducing primary sulfur assimilation.
    Sci Rep, 2016. 6: p. 31854
    [PMID:27549907]