PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00035731001

Common Name

GSBRNA2T00035731001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 280aa MW: 32180 Da PI: 9.0922

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00035731001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.9	6.1e-47	8	134	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPt+eel ++yLk+ v gk ++ evi ++iy+++PwdLp+ k +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d+++ GSBRNA2T00035731001 8 PGFRFHPTEEELTDYYLKNMVCGKFSKV-EVIGFLNIYRHDPWDLPRLSKIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKI 96 9*********************9999.99***********8778899********************************* PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s ++++glkktLvfy+grap g+ktdWvm+eyr+ GSBRNA2T00035731001 97 ISLsePKRVIGLKKTLVFYRGRAPGGSKTDWVMNEYRM 134 987557778*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.373	6	152	IPR003441	NAC domain
SuperFamily	SSF101941	5.89E-55	7	152	IPR003441	NAC domain
Pfam	PF02365	2.9E-25	8	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MSKEIELPGF RFHPTEEELT DYYLKNMVCG KFSKVEVIGF LNIYRHDPWD LPRLSKIGER 60 EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRVIGLKK TLVFYRGRAP 120 GGSKTDWVMN EYRMPDNCTL PKDVVLCKIY RKATSLKVLE QRAEMESKMT QTCPNSPLSS 180 SETISYVGKE ENLMKTSFPF PQASAMQEAN NNFMLQGHEE KQRETEMKES SSSLKLPCGV 240 LPLPELQLPK QGLEWGQDQF LSISPWLQNL TPIVNLLNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-45	8	155	22	171	NAC domain-containing protein 19
3swm_B	6e-45	8	155	22	171	NAC domain-containing protein 19
3swm_C	6e-45	8	155	22	171	NAC domain-containing protein 19
3swm_D	6e-45	8	155	22	171	NAC domain-containing protein 19
3swp_A	6e-45	8	155	22	171	NAC domain-containing protein 19
3swp_B	6e-45	8	155	22	171	NAC domain-containing protein 19
3swp_C	6e-45	8	155	22	171	NAC domain-containing protein 19
3swp_D	6e-45	8	155	22	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.26486	1e-126	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00035731001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353307	0.0	AK353307.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-I17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013609230.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	Q10S65	1e-89	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A078GNG8	0.0	A0A078GNG8_BRANA; BnaC09g09210D protein
TrEMBL	A0A0D3E338	0.0	A0A0D3E338_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6E184	0.0	A0A3P6E184_BRAOL; Uncharacterized protein
STRING	Bo9g024360.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-169	NAC domain containing protein 36

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]