PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00036004001

Common Name

GSBRNA2T00036004001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 546aa MW: 61139.6 Da PI: 8.4027

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00036004001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.2	5.2e-29	57	141	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laL+++r+em++++r++ lk+plWe+vs+k+ e g++r++k+Ckek+en++k++k++ke++++r++++ t+++f+qlea GSBRNA2T00036004001 57 RWPREETLALLRIRSEMDSTFRDATLKAPLWEHVSRKLLELGYKRNAKKCKEKFENVQKYHKRTKETRGGRHEGK--TYKFFSQLEA 141 8******************************************************************985555..6*****85 PP
2	trihelix	104.1	1e-32	340	424	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+e+laLi++r+ me r++++ k+ lWee+s m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpy+++l+ GSBRNA2T00036004001 340 RWPKEEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYYHRLD 424 8*******************************************************************8.99999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.934	50	114	IPR017877	Myb-like domain
SMART	SM00717	0.017	54	116	IPR001005	SANT/Myb domain
Pfam	PF13837	3.0E-19	56	142	No hit	No description
CDD	cd12203	8.45E-24	56	121	No hit	No description
SMART	SM00717	0.0011	337	399	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.131	339	397	IPR017877	Myb-like domain
Pfam	PF13837	5.5E-22	339	424	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.4E-4	339	396	IPR009057	Homeodomain-like
CDD	cd12203	4.27E-28	340	404	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MEQGGGGGGN EVVEEASPIS SRPPANMEEL MRFSAAADDG GGFGGGGGSS SSSSGNRWPR 60 EETLALLRIR SEMDSTFRDA TLKAPLWEHV SRKLLELGYK RNAKKCKEKF ENVQKYHKRT 120 KETRGGRHEG KTYKFFSQLE ALNTSTTPAP PSSLDVTPLS VANPVQQPSS SSSQFPVFSL 180 TQTPPPSSTA SGMGSHKRKR ENRGTGGGKM MELFEGLVRQ VMQKQAAMQR SFLEALEKRE 240 QERLAREEAW KRQEMSRLAR EHEIMAQERA ASASRDAAII SLIQKITGHT IQLPHSLSSQ 300 PSPPPPAAKL LPPPPPHQPQ QQQQQEMIMS SDQSLPSSSR WPKEEILALI NLRSGMEPRY 360 QDNVPKGLLW EEISTSMKRM GYNRNAKRCK EKWENINKYY KKVKESNKKR PQDAKTCPYY 420 HRLDLLYSSK VLGSGAGSST SSLPQDQIST IQKQKPREET PQGAEKPEDL VMRELMQQKQ 480 QQEEDSMIGE YEKIEASHNY NMEEEEMDEE LDDDEKSAAY EIAFQSPANR GGNGHSEPPF 540 LTMVQ*

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MEQGGGGGGN EVVEEASPIS SRPPANMEEL MRFSAAADDG GGFGGGGGSS SSSSGNRWPR  60
EETLALLRIR SEMDSTFRDA TLKAPLWEHV SRKLLELGYK RNAKKCKEKF ENVQKYHKRT  120
KETRGGRHEG KTYKFFSQLE ALNTSTTPAP PSSLDVTPLS VANPVQQPSS SSSQFPVFSL  180
TQTPPPSSTA SGMGSHKRKR ENRGTGGGKM MELFEGLVRQ VMQKQAAMQR SFLEALEKRE  240
QERLAREEAW KRQEMSRLAR EHEIMAQERA ASASRDAAII SLIQKITGHT IQLPHSLSSQ  300
PSPPPPAAKL LPPPPPHQPQ QQQQQEMIMS SDQSLPSSSR WPKEEILALI NLRSGMEPRY  360
QDNVPKGLLW EEISTSMKRM GYNRNAKRCK EKWENINKYY KKVKESNKKR PQDAKTCPYY  420
HRLDLLYSSK VLGSGAGSST SSLPQDQIST IQKQKPREET PQGAEKPEDL VMRELMQQKQ  480
QQEEDSMIGE YEKIEASHNY NMEEEEMDEE LDDDEKSAAY EIAFQSPANR GGNGHSEPPF  540
LTMVQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	107	KRNAKKCKE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.25670	5e-90	flower

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00036004001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC021045	1e-139	AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence.
GenBank	AC027035	1e-139	AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence.
GenBank	AJ003215	1e-139	AJ003215.1 Arabidopsis thaliana GTL1 gene.
GenBank	AY140085	1e-139	AY140085.1 Arabidopsis thaliana DNA-binding factor, putative (At1g33240) mRNA, complete cds.
GenBank	BT008824	1e-139	BT008824.1 Arabidopsis thaliana At1g33240 mRNA, complete cds.
GenBank	CP002684	1e-139	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009107944.1	0.0	PREDICTED: trihelix transcription factor GTL1-like isoform X1
Swissprot	Q39117	1e-114	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A078JCB4	0.0	A0A078JCB4_BRANA; BnaCnng39380D protein
STRING	Bra036731.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6226	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	2e-83	GT-2-like 1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]