PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036119001
Common NameGSBRNA2T00036119001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 303aa    MW: 31897.6 Da    PI: 6.159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036119001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.8e-12110155555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  GSBRNA2T00036119001 110 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 155
                          99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.46E-11103159No hitNo description
SuperFamilySSF474591.7E-16103163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.028105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-16107162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9110155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-13111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MREREAKKED KTEEMENGNG EGKGEFINQN NSDYFLDSMS MLSSLPPCWD SSLPPPHPPP  60
PQSLLHALTE SGGPSQDGLQ AQGTVSTTSA PVARQKPRVR ARRGQATDPH SIAERLRRER  120
IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSVSRLGGAR AAGGPGFNGL  180
TSEAGGRLNA LSGPSNGVNG KGNGTGSSSE SLRSTEQRVA KLMEEDMGSA MQYLQGKGLC  240
LMPISLATAI SSTSNHSRGA LFNPSSNVVA AEEANVAVAS ASAAAAPEAS TCMEDDVSAS  300
KA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes of the root maturation zone. Detected constitutively in flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:16581911}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036119001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722225.10.0transcription factor bHLH82-like
SwissprotQ9LSQ31e-158BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A078J6U60.0A0A078J6U6_BRANA; BnaCnng39760D protein
STRINGBo9g133640.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-102LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  4. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]