PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00036145001

Common Name

GSBRNA2T00036145001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 209aa MW: 23705.8 Da PI: 9.7866

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00036145001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.6e-30	71	129	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+W+KYGqK ++g++++rsYY+Ct++gC vkk+versa++ k ++itY g+H+h+ GSBRNA2T00036145001 71 LDDGYSWKKYGQKLIRGNPNARSYYKCTFSGCDVKKHVERSADNAKSLVITYYGNHEHD 129 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.5E-31	58	131	IPR003657	WRKY domain
SuperFamily	SSF118290	8.11E-26	65	131	IPR003657	WRKY domain
PROSITE profile	PS50811	30.549	66	131	IPR003657	WRKY domain
SMART	SM00774	4.4E-33	71	130	IPR003657	WRKY domain
Pfam	PF03106	1.1E-23	72	129	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MMISNNGLPH QRIDVDQAPE DHNIVDVLNV EPSSPERRGN EVSLSNMIMA SRTGRYDERV 60 VIQMKSEENN LDDGYSWKKY GQKLIRGNPN ARSYYKCTFS GCDVKKHVER SADNAKSLVI 120 TYYGNHEHDA PVKRRKCYSL KKRSGSSMFQ DASNRTPRLG RPPFSSSAFQ VFPPSLEPHL 180 DMTQINMKGL SKLPSLPANQ MVHRYTWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	62	132	8	78	Probable WRKY transcription factor 4
2lex_A	6e-26	62	132	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.27015	1e-180	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00036145001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593143	1e-180	KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625013.1	1e-148	PREDICTED: probable WRKY transcription factor 10
TrEMBL	A0A078J9P0	1e-155	A0A078J9P0_BRANA; BnaCnng39880D protein
TrEMBL	A0A0D3BNA4	1e-155	A0A0D3BNA4_BRAOL; Uncharacterized protein
STRING	Bo3g185390.1	1e-156	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19518	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55600.1	5e-38	WRKY DNA-binding protein 10

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]