PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036146001
Common NameGSBRNA2T00036146001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 204aa    MW: 22892.7 Da    PI: 7.1268
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036146001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.83.9e-27107165159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+W+KYGq+ + g++++r YY+Ct+agC vkk+ver a++ k ++itY g+H+h+
  GSBRNA2T00036146001 107 LDDGYSWKKYGQRLIMGNQNTRFYYKCTFAGCDVKKHVERRADNVKSLVITYYGNHEHD 165
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-2796167IPR003657WRKY domain
SuperFamilySSF1182904.45E-24101167IPR003657WRKY domain
PROSITE profilePS5081127.91102167IPR003657WRKY domain
SMARTSM007745.6E-26107166IPR003657WRKY domain
PfamPF031062.8E-21108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEMTSYSASQ LIFSIAPPSP VAIIRPPEMV ESSGGNHATM MLSNNGLPHQ RMDVDQALED  60
HNIIDLNVVP SSPKTREDEV SNIIGTLRAG RYNEGVIIQM ESEENNLDDG YSWKKYGQRL  120
IMGNQNTRFY YKCTFAGCDV KKHVERRADN VKSLVITYYG NHEHDAPVQR RKCYSLKKRS  180
GSSMFQDASN RTPRVNSSEG ETV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-2398168878Probable WRKY transcription factor 4
2lex_A7e-2398168878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.270157e-90seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036146001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931430.0KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106855.11e-145PREDICTED: probable WRKY transcription factor 10
TrEMBLA0A078JAD41e-152A0A078JAD4_BRANA; BnaCnng39890D protein
STRINGBra030848.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1951837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.14e-30WRKY DNA-binding protein 10
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]