PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00036312001

Common Name

GSBRNA2T00036312001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 229aa MW: 26560.8 Da PI: 9.1501

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00036312001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	102.4	2.6e-32	32	140	1	97
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k ltpsdv+k++rlv+pk++ae+h + +e+++ lt+edesg+ W+++++y+++s++yvltkGW+++vk+++L +gD GSBRNA2T00036312001 32 FEKSLTPSDVGKLNRLVIPKQHAEKHfplnnagddvaaAETTEKGMLLTFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLHAGD 121 99****************************99999977788******************************************* PP EEEEEE-SSSEE..EEEEE CS B3 79 fvvFkldgrsefelvvkvf 97 +v F++++ + + +++++ GSBRNA2T00036312001 122 VVFFQRHRFDLHRVFIGWR 140 ***54325555566665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-40	27	149	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-32	29	144	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.21E-29	31	136	No hit	No description
Pfam	PF02362	1.4E-29	32	141	IPR003340	B3 DNA binding domain
SMART	SM01019	8.5E-24	32	143	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.211	32	141	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MSGNHYSRDI QHNTPSVHHH QNYAVVDREY LFEKSLTPSD VGKLNRLVIP KQHAEKHFPL 60 NNAGDDVAAA ETTEKGMLLT FEDESGKCWK FRYSYWNSSQ SYVLTKGWSR YVKDKHLHAG 120 DVVFFQRHRF DLHRVFIGWR KRGEVSSPTA VSVVSQEARV NTTAYWSGLT TPYRQVHAST 180 SSYPNIHQEY SHYGKTLYLL SQFVFCYFSL IHVSDIYTLS VFKDMCHR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-48	25	146	1	117	B3 domain-containing transcription factor NGA1
5os9_B	1e-48	25	146	1	117	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00036312001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022549179.1	1e-144	B3 domain-containing protein At3g11580-like isoform X2
Swissprot	Q8RYD3	1e-102	Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBL	A0A078JDE1	1e-171	A0A078JDE1_BRANA; BnaC01g44850D protein
STRING	Bra041023.1-P	1e-142	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11580.2	1e-106	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]