PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00036389001

Common Name

GSBRNA2T00036389001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 371aa MW: 42004.9 Da PI: 7.8216

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00036389001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	315	339	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C++ +++ +++k+H+++ H GSBRNA2T00036389001 315 FYCDLCDYDYNSLDDFKKHLSRkeH 339 78******************98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01936	7.8E-11	11	95	IPR021139	NYN domain, limkain-b1-type
CDD	cd10910	3.25E-31	11	95	No hit	No description
CDD	cd10910	2.91E-41	119	264	No hit	No description
Pfam	PF01936	1.2E-9	119	242	IPR021139	NYN domain, limkain-b1-type
SuperFamily	SSF57667	8.51E-5	308	340	No hit	No description
PROSITE pattern	PS00028	0	317	339	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MSGNDDAETA KIEVWWDMKN CPIPEGYDAR RVRPSIERAF NKRGYSTCPV SITAYGDQNQ 60 TPCHVLRGLS STGVAVAHTK SESTRSVMYR DMVEWRELSC VTETWAKNYP AMPEHATAKI 120 LVLWNMNDCP IPEGYDACRV RPSIERALKE VGYTGPVSIT AYADQKQTPD HHLLALSSTG 180 VDYAHTLPSV EYSRMITDFE EWAEDNPAPA SIMIISNELA LRKSHSSRVC RKLQESNYKC 240 FLAYSVRPFK MPVLLTSAEW LWESLLSGGC FLSTGLAHVP IITSTEDLLA VSETKRHILQ 300 TCSGSEMVVA STGMFYCDLC DYDYNSLDDF KKHLSRKEHT YEVGYPPKTK RIRKAPRKCF 360 LLRPLRFTRR *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MSGNDDAETA KIEVWWDMKN CPIPEGYDAR RVRPSIERAF NKRGYSTCPV SITAYGDQNQ  60
TPCHVLRGLS STGVAVAHTK SESTRSVMYR DMVEWRELSC VTETWAKNYP AMPEHATAKI  120
LVLWNMNDCP IPEGYDACRV RPSIERALKE VGYTGPVSIT AYADQKQTPD HHLLALSSTG  180
VDYAHTLPSV EYSRMITDFE EWAEDNPAPA SIMIISNELA LRKSHSSRVC RKLQESNYKC  240
FLAYSVRPFK MPVLLTSAEW LWESLLSGGC FLSTGLAHVP IITSTEDLLA VSETKRHILQ  300
TCSGSEMVVA STGMFYCDLC DYDYNSLDDF KKHLSRKEHT YEVGYPPKTK RIRKAPRKCF  360
LLRPLRFTRR *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28820	3e-81	microspore-derived embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00036389001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189548	9e-81	AC189548.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005A08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009136967.2	1e-131	PREDICTED: uncharacterized protein LOC103861020
TrEMBL	A0A078J7C8	0.0	A0A078J7C8_BRANA; BnaA03g58440D protein
STRING	Bra012628.1-P	1e-128	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1032	4	4

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]