PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036606001
Common NameGSBRNA2T00036606001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LSD
Protein Properties Length: 155aa    MW: 16381.1 Da    PI: 8.0792
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036606001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1468.4e-153761125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         C+gCr+lL+YP GA+sV+Ca+C++V
  GSBRNA2T00036606001 37 CSGCRNLLMYPVGATSVCCAVCNAV 61
                         ************************9 PP
2zf-LSD146.75.3e-1576100125
              zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                          CggC+tlL+Y rGA+sV+C++C+tV
  GSBRNA2T00036606001  76 CGGCHTLLMYIRGATSVQCSCCHTV 100
                          ************************9 PP
3zf-LSD136.86.2e-12114138125
              zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                          Cg+C+ lL+Y +GA+sV+Ca+C ++
  GSBRNA2T00036606001 114 CGSCKMLLMYQYGARSVKCAVCSFI 138
                          **********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.6E-143464IPR005735Zinc finger, LSD1-type
SuperFamilySSF486957.67E-534135IPR011031Multihaem cytochrome
PfamPF069431.4E-113761IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.109.8E-451135No hitNo description
TIGRFAMsTIGR010539.6E-1573102IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-1276100IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.3E-11111140IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-11114138IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MLINEKSHFH ISFVLFSFFT MNLRFIGSTG GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA  60
VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA HVNCGSCKML  120
LMYQYGARSV KCAVCSFITS VGGSTSTTDQ KLNN*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036606001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1932950.0AB193295.1 Brassica rapa BrLOL1 mRNA for LSD-One-Like 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288950.11e-88protein LOL1
RefseqNP_849742.22e-88lsd one like 1
RefseqXP_009151438.11e-88PREDICTED: protein LOL1 isoform X2
RefseqXP_013742645.11e-88protein LOL1 isoform X2
SwissprotQ93ZB16e-84LOL1_ARATH; Protein LOL1
TrEMBLA0A078GP001e-108A0A078GP00_BRANA; BnaA05g18100D protein
STRINGAT1G32540.19e-88(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.12e-77lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]