PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036647001
Common NameGSBRNA2T00036647001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 118aa    MW: 14433.7 Da    PI: 9.0855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036647001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.0002844631029
                         HHHHHHHHHHHHHHHCTSCC CS
                  HLH 10 rrRRdriNsafeeLrellPk 29
                         ++R++++ + ++eL++l P 
  GSBRNA2T00036647001 44 KKRMNKMADEIAELKSLCPM 63
                         9***************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MDLWEEKKNK REKMKEYFDI VHNDGLHFRQ PWVFDVQEEV QRLKKRMNKM ADEIAELKSL  60
CPMVHEFRYC TRTQKYQALT SHFHILVYDS DAFWFFRLEL RSELLLGKNA QVYLRTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036647001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078GK433e-82A0A078GK43_BRANA; BnaA05g17870D protein
STRINGBra010195.1-P3e-41(Brassica rapa)
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]