PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036743001
Common NameGSBRNA2T00036743001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 332aa    MW: 37991 Da    PI: 7.2606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036743001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05236259123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y+Cp+C+ +F ++  +  Hi++ H
  GSBRNA2T00036743001 236 YTCPKCKNVFDTSQKFAAHISSvH 259
                          9*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.245236264IPR007087Zinc finger, C2H2
PROSITE patternPS000280238259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MYSIPNGLNS YGDNTMNLHG SVPTQMNSSF GDPETKMFQS MFTTSVITNH HGLFSSSHAS  60
NCYRDSSSFG FNNSHAAYQM RTNMVSDVVD YFPINHNPQV SQISITQTIT RRYSVIVPTR  120
SLITAQNEYE RAMDPNISYP SFYPQTFVDN QRTYPQSFVD NQSNILNPTP LSTIYPRNVN  180
QFSFSSKQHH DQHVPHHQPV IKRRKFDEIF DGFDFEENGV YDGRTHSLPY EKYGPYTCPK  240
CKNVFDTSQK FAAHISSVHY KNETVEEKAK RYSARNKRRF RKIDQTMHGE SQMIQPEERV  300
VEASGGNNNI ASGIEASQQQ LVVKEEPTYE P*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036743001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610242.10.0PREDICTED: uncharacterized protein LOC106316926
TrEMBLA0A078GNU00.0A0A078GNU0_BRANA; BnaC09g36070D protein
TrEMBLA0A0D3ED960.0A0A0D3ED96_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EKJ50.0A0A3P6EKJ5_BRAOL; Uncharacterized protein
STRINGBo9g147060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.11e-107C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]