PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00036845001

Common Name

GSBRNA2T00036845001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 198aa MW: 22452.5 Da PI: 5.1888

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00036845001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.9	1.5e-26	95	145	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++ +++k+F+ pik+AAkeL+v+lTvLK++CR++GI+RWPhRk+ksl GSBRNA2T00036845001 95 KDKLEMAEIKKFFDRPIKNAAKELNVGLTVLKKRCRELGIHRWPHRKLKSL 145 67899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.984	78	166	IPR003035	RWP-RK domain
Pfam	PF02042	7.5E-22	98	145	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MDPNSVLPLD SLSIKNQDDS DSCFDMLKKL PPLDSLLYIE DPKPNAGFNS QFDPTSFEEF 60 SENIEGNNTI SSDTIVSSNE RCQKRTLKKS NTVTKDKLEM AEIKKFFDRP IKNAAKELNV 120 GLTVLKKRCR ELGIHRWPHR KLKSLNSLIG NLKGVGMEEE VKNLEEHRIL IKQEPDAELT 180 DWNQEAEASF SISLFLI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00036845001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013620055.1	2e-99	PREDICTED: protein RKD4-like
Swissprot	Q9LVU8	4e-72	RKD4_ARATH; Protein RKD4
TrEMBL	A0A078GQZ7	1e-141	A0A078GQZ7_BRANA; BnaA02g10530D protein
STRING	Bra022622.1-P	1e-105	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-74	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]