PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036871001
Common NameGSBRNA2T00036871001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 199aa    MW: 22707.6 Da    PI: 9.4739
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036871001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.3e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W +eEd +l  ++  +G g+W+ I+r+ g++R +k+c++rw +yl
  GSBRNA2T00036871001 14 RGLWKPEEDMILRSYIDTHGEGNWADISRRSGLKRGGKSCRLRWKNYL 61
                         788*****************************99************97 PP
2Myb_DNA-binding51.72e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg +T++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  GSBRNA2T00036871001  67 RGGMTPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 112
                          6789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.409961IPR017930Myb domain
SuperFamilySSF466891.01E-2812108IPR009057Homeodomain-like
SMARTSM007174.4E-131363IPR001005SANT/Myb domain
PfamPF002492.1E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-221568IPR009057Homeodomain-like
CDDcd001672.90E-91761No hitNo description
PROSITE profilePS5129425.02762116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002498.1E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-2469115IPR009057Homeodomain-like
CDDcd001674.58E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEKREEGRKT HVKRGLWKPE EDMILRSYID THGEGNWADI SRRSGLKRGG KSCRLRWKNY  60
LRPNIKRGGM TPQEQDLIIR MHKLLGNRWS LIAGRLPGRT DNEVKNYWNT HLNKKSSSRK  120
QNATESVEAT PWVDKPVMST EVGGSHGGGE GEEGTTTTWM EETNFFARIE SPQPLTAHYP  180
DTLCFDPSFA FTDCFPLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036871001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127225.11e-145PREDICTED: transcription factor MYB82
SwissprotQ9LTF71e-108MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A078GKK41e-146A0A078GKK4_BRANA; BnaA02g10750D protein
TrEMBLA0A398A9681e-146A0A398A968_BRACM; Uncharacterized protein
STRINGBra022602.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-97myb domain protein 82
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]