PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00036930001

Common Name

GSBRNA2T00036930001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 959aa MW: 106788 Da PI: 6.9816

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00036930001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.2	9.9e-09	147	229	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 W+ +e l+L +a r ++ r+g+ ++ + +ev++++ ++g++r +k kw+n+ ++++k++e+ek+ GSBRNA2T00036930001 147 WKPNEMLCLARAWRVQYQNQRTGSgsgsgsgegrgkTRAEKDREVAEYLNRKGVNRDSKVAGTKWDNMLGEFRKVNEWEKGAD 229 77777888877777555555544333444444444499999**************************************9863 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-7	145	230	No hit	No description
CDD	cd00180	1.11E-10	806	947	No hit	No description
SuperFamily	SSF56112	7.28E-14	806	946	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	1.2E-5	808	910	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence Send to blast
MGETTKGDAT KPSPNQISPP KDSSLDHQTP NPSVLHHQHQ SFLSSPIFIP TVSSPGAPVI 60 PKRPRFSSSG GLSPPQWRAL PSPSTVPTAS TISSLPFPST AVIAASSTET AGSSPLVQEA 120 TNTEKQQPET ESFQHKFRKG KYVSPVWKPN EMLCLARAWR VQYQNQRTGS GSGSGSGEGR 180 GKTRAEKDRE VAEYLNRKGV NRDSKVAGTK WDNMLGEFRK VNEWEKGADR ERFGKSYFRL 240 SPYERKQHQL PASFDEEVYN ELALFIGPRV RAPTISRSVS GGATADVTLT PPSAETLPPP 300 LHPPVMTSRD DINNNPITSI GRGKRLALSI VGDDHPQYPY SSNIARGSGL FSNRSLYYNP 360 SCERIPSSSS SSSSLKDLRR VGKIRLTWEE SVNLWAEEGE VDYGRIRVCG SSFLNADELT 420 YLDDSMVAST MESFEDGPLK GFSLDKFISG QHLKVFGRQK STSSSAPPLS VNMAFDRAQL 480 PLSEHIHKSI STLEFQDPSE HCLSKLRVPA GNLPSITELA RYLQEPPPEN LRFPLRLDVY 540 NDLPLGKELF FSTSSTELLD CRAITYDILG PIMSPLNKGF VIFSKDSLIP LWDDCVNRMV 600 SKFCEMVVLR KPDSSSCVEN VQDQWPNVMG FVKGFGLWRG EEVDKVREGA PDPSSLLVEK 660 ILWSYNDLPY ILGYYAIGLT VTFCSLSRSS YDRVTCTDLY SFDVSSPSDR IKALVPCYRL 720 ASLLPLLADQ CTAGRLCYND FERIIHGDFL TEMTPHTVTK YYSSKTKWNV AKGIYDFLDQ 780 RVPHAEYLDK ASEKDLSLSF KPRGIRVKPL NVDQLIESLM CVTRALVALH DISFMHRNIG 840 WENVMKSETT STSNAEWFVC GFEEAAESPQ LNPHRPAAQE EEEERGRHAP EMERGLHAVK 900 VDVWGVGYMI KTCGVSNVPK MLRELQGKCL EPNQENRPTA ADCFHHLLQV QPAVPSSY*

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence Send to blast

MGETTKGDAT KPSPNQISPP KDSSLDHQTP NPSVLHHQHQ SFLSSPIFIP TVSSPGAPVI  60
PKRPRFSSSG GLSPPQWRAL PSPSTVPTAS TISSLPFPST AVIAASSTET AGSSPLVQEA  120
TNTEKQQPET ESFQHKFRKG KYVSPVWKPN EMLCLARAWR VQYQNQRTGS GSGSGSGEGR  180
GKTRAEKDRE VAEYLNRKGV NRDSKVAGTK WDNMLGEFRK VNEWEKGADR ERFGKSYFRL  240
SPYERKQHQL PASFDEEVYN ELALFIGPRV RAPTISRSVS GGATADVTLT PPSAETLPPP  300
LHPPVMTSRD DINNNPITSI GRGKRLALSI VGDDHPQYPY SSNIARGSGL FSNRSLYYNP  360
SCERIPSSSS SSSSLKDLRR VGKIRLTWEE SVNLWAEEGE VDYGRIRVCG SSFLNADELT  420
YLDDSMVAST MESFEDGPLK GFSLDKFISG QHLKVFGRQK STSSSAPPLS VNMAFDRAQL  480
PLSEHIHKSI STLEFQDPSE HCLSKLRVPA GNLPSITELA RYLQEPPPEN LRFPLRLDVY  540
NDLPLGKELF FSTSSTELLD CRAITYDILG PIMSPLNKGF VIFSKDSLIP LWDDCVNRMV  600
SKFCEMVVLR KPDSSSCVEN VQDQWPNVMG FVKGFGLWRG EEVDKVREGA PDPSSLLVEK  660
ILWSYNDLPY ILGYYAIGLT VTFCSLSRSS YDRVTCTDLY SFDVSSPSDR IKALVPCYRL  720
ASLLPLLADQ CTAGRLCYND FERIIHGDFL TEMTPHTVTK YYSSKTKWNV AKGIYDFLDQ  780
RVPHAEYLDK ASEKDLSLSF KPRGIRVKPL NVDQLIESLM CVTRALVALH DISFMHRNIG  840
WENVMKSETT STSNAEWFVC GFEEAAESPQ LNPHRPAAQE EEEERGRHAP EMERGLHAVK  900
VDVWGVGYMI KTCGVSNVPK MLRELQGKCL EPNQENRPTA ADCFHHLLQV QPAVPSSY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00036930001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013709922.1	0.0	uncharacterized protein LOC106413724
TrEMBL	A0A078GPI4	0.0	A0A078GPI4_BRANA; BnaA02g11220D protein
STRING	Bra022563.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-09	Trihelix family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]