PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037007001
Common NameGSBRNA2T00037007001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 438aa    MW: 48996.9 Da    PI: 9.2369
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037007001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.2e-076689226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         k+ lC+ffa  G C  Gd+C F+H+
  GSBRNA2T00037007001 66 KRILCKFFAH-GACLKGDNCEFSHD 89
                         889***6666.*************5 PP
2zf-CCCH23.59.5e-0897117526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C f++r G C+yG+rC++ H+
  GSBRNA2T00037007001  97 VCTFYQR-GLCSYGSRCRYEHV 117
                          5999999.***********997 PP
3zf-CCCH22.22.5e-07174197226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C+ +a+ G C++Gd+C+ +Hg
  GSBRNA2T00037007001 174 DQPICS-YAAAGDCPRGDQCPHIHG 197
                          578999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.0E-56291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1876491IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-56490IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-86689IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.39992119IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-494118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-594116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-497116IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-597117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535172199IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017173198IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4174197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.8E-9224300IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.59E-13231305No hitNo description
CDDcd001621.33E-4240300No hitNo description
PfamPF000979.6E-7241298IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.238241299IPR001841Zinc finger, RING-type
SMARTSM001845.3E-7241298IPR001841Zinc finger, RING-type
PROSITE patternPS005180265274IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.197328357IPR000571Zinc finger, CCCH-type
SMARTSM003560.16328356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MISIRAFNDN QIRTQVRPWK KKKNAELLRR LVITGLNRFL GAQFLGKPIL GTVVPPRTPS  60
ISPMSKRILC KFFAHGACLK GDNCEFSHDW KDPTNNVCTF YQRGLCSYGS RCRYEHVKLK  120
PHPSPASSSS ALPRSSASEK DLSPLPSSSS SPAWTLDSSD NTFSSSTSSS KPQDQPICSY  180
AAAGDCPRGD QCPHIHGDLC PTCGKRCLHP FRPEEREEHK RSCEKKQKQL EALKLSQEVE  240
CCVCLERVLS KPTPAERKFG LLTECDHAFC IGCIRNWRSS SPSTGMDVNS TLRACPICRK  300
LSYFVVPSVI WFSAPEEKKE IMDNYRDKLR SIDCKHFNFG DGNCPFGTSC FYKHTVKPGS  360
YAWKYHRPPP RRPSPSGSNL SDMDTFFSMM GGIMSEVLGM DLTHPQSPSN KRPNPANRVD  420
VGAEADSRGF NLTRKRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037007001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108127.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like
SwissprotE0X9N41e-176C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A078GR890.0A0A078GR89_BRANA; BnaA08g07960D protein
STRINGBra038415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-131C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]