PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037243001
Common NameGSBRNA2T00037243001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 230aa    MW: 26746.9 Da    PI: 5.2865
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037243001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-182175256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++ ++f++eq++ Le +Fe++  +  +++ +LA++l+L+ rqV +WFqN+Ra++k
  GSBRNA2T00037243001 21 KNQRRFSEEQIKSLEMMFESETRLEPRKKVQLARELSLQPRQVAIWFQNKRARWK 75
                         66789*************************************************9 PP
2HD-ZIP_I/II118.73.3e-3822113293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          ++rr+s+eq+k+LE++Fe+e++Lep++Kv+lareL lqprqva+WFqn+RAR+k+kqlE++++ L+++y+ l+++ e+L+ke++ L +el
  GSBRNA2T00037243001  22 NQRRFSEEQIKSLEMMFESETRLEPRKKVQLARELSLQPRQVAIWFQNKRARWKSKQLETEFNILRQNYNDLASQFESLKKENQGLVSEL 111
                          68************************************************************************************9998 PP

          HD-ZIP_I/II  92 ke 93 
                          ++
  GSBRNA2T00037243001 112 DR 113
                          75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-171377IPR009057Homeodomain-like
SuperFamilySSF466899.84E-171579IPR009057Homeodomain-like
PROSITE profilePS5007117.5241777IPR001356Homeobox domain
SMARTSM003891.5E-142081IPR001356Homeobox domain
CDDcd000863.04E-142178No hitNo description
PfamPF000461.8E-152175IPR001356Homeobox domain
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PfamPF021832.4E-1477119IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MMSADPFMTM KKIKKSSHNE KNQRRFSEEQ IKSLEMMFES ETRLEPRKKV QLARELSLQP  60
RQVAIWFQNK RARWKSKQLE TEFNILRQNY NDLASQFESL KKENQGLVSE LDRLNEAMQK  120
KRVEGRECCG DQTVVALSST DHESEKEENT NPEPEEVRPD MEVYEKGHHD DYGYNSHIKR  180
EYFGGFEEEA DHLMNIVEPA DSCLTSSVGW REVFGPANDS SMARILAGF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037243001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716910.11e-157homeobox-leucine zipper protein ATHB-7-like
SwissprotP468971e-116ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A078GRP21e-171A0A078GRP2_BRANA; BnaC04g50970D protein
STRINGBra039265.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-111homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]