PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037255001
Common NameGSBRNA2T00037255001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 444aa    MW: 49467.6 Da    PI: 5.6002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037255001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.1e-14303349455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ Le A+ YIk+Lq
  GSBRNA2T00037255001 303 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLEDAISYIKELQ 349
                          799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.2E-4946227IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.22E-18298357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-17302353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-15302353No hitNo description
PfamPF000104.5E-12303349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MNDLGWDEEE TSLANAVLGN SASDFLKTIS SSNQSLFLLM ETDDTLNKKL SSLVEWPNSE  60
NFSWNYAILW QQTVSRSGHR VLGWGDGCCR EPKEEESSVC NRRSSTLEEE EMRKRVLQKL  120
QRVFGESDED NYALSLERVT ATETFFLASM YFFFNHGEGG PGRCFASGRH VWWVDSGDDY  180
CFRSFMARSA GIRTVVMVNT EAGVVELGSV WSLPENLELV KSVQGLFTRR AEPPLVVHKL  240
FGQELNVVGS STNNQLRKSD SCNENRLAVG GGGGGGGGAC FVEEKRPKKR GRKPANGREE  300
PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLED AISYIKELQE RVKIIEGEGV  360
RKDRTEVEIQ AVGEEVVVRV VSPLETHPAS RIIQAMRNAE VSVMESKLSS AEETVFHSFV  420
VKSSNGSDPL TREKLIAAIS TIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-27297373280Transcription factor MYC2
5gnj_B6e-27297373280Transcription factor MYC2
5gnj_E6e-27297373280Transcription factor MYC2
5gnj_F6e-27297373280Transcription factor MYC2
5gnj_G6e-27297373280Transcription factor MYC2
5gnj_I6e-27297373280Transcription factor MYC2
5gnj_M6e-27297373280Transcription factor MYC2
5gnj_N6e-27297373280Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284292KRPKKRGRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In seedlings, mainly expressed in root tips, cotyledons, hypocotyls, and leaves, as well as its guard cells. In adult plant, detectable in stems, flowers, and siliques. {ECO:0000269|PubMed:17828375}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037255001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631111.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotQ9ZPY81e-127AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A078GQ340.0A0A078GQ34_BRANA; BnaC04g50860D protein
STRINGBo4g197150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-130ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]