PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037343001
Common NameGSBRNA2T00037343001, LOC106370199
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 286aa    MW: 32482.9 Da    PI: 6.7886
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037343001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-05426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC  C ksF + s L  H+r+H
  GSBRNA2T00037343001  4 YKCRFCLKSFINGSALGGHMRSH 26
                         9*********************9 PP
2zf-C2H214.97.7e-05172194123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC+ Cgk F++   L  H  +H
  GSBRNA2T00037343001 172 FKCETCGKAFKSYQALGGHRASH 194
                          89***********9999998887 PP
3zf-C2H212.60.00042220242123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  GSBRNA2T00037343001 220 HQCPICLRVFTSGQALGGHKRSH 242
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.37E-10326No hitNo description
PfamPF139122.4E-5327IPR007087Zinc finger, C2H2
SMARTSM003550.026426IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4426IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.429426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576679.37E-10167194No hitNo description
PfamPF139122.6E-11171196IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.967172199IPR007087Zinc finger, C2H2
SMARTSM003550.026172194IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-4172200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SMARTSM003550.072220242IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-11220242IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141220242IPR007087Zinc finger, C2H2
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MERYKCRFCL KSFINGSALG GHMRSHMLTL SSEREERPSQ LSEETESDAS SSSSSDDKKE  60
MEFGFSESET ESSRINPTRK RSKRTRKLGS FGFDFKKVKT SQLGETEHHH SSASDTTTEE  120
DLAFCLIMLS RDKWKQQNKT KQTLVEEEEE EEEDDESDHE CKNRGGGGRG RFKCETCGKA  180
FKSYQALGGH RASHRKNKTF TKTEHEEKTE YSVNEEKKIH QCPICLRVFT SGQALGGHKR  240
SHGINNIVSG RVPKEEVSVK QRMIDLNLPA PNEDVETSVV VFDEW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037343001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665709.10.0zinc finger protein ZAT4
SwissprotQ9SHD01e-105ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLA0A078GQB20.0A0A078GQB2_BRANA; BnaC04g50110D protein
STRINGBo4g195370.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-86C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]