PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037476001
Common NameGSBRNA2T00037476001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 253aa    MW: 28380.2 Da    PI: 10.0767
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037476001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57386.43.7e-2759144397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                          ++r+w+eeDe+++L+Gl++++a++g +p++++ +fy+fv +si  k+sk+q+++Kir+LK Kf  +++k         ++++ +++f ls
  GSBRNA2T00037476001  59 SSRIWNEEDELTVLKGLVEYQAQKGNEPKSNWGDFYRFVGGSITGKFSKEQVLTKIRKLKAKFIANMQK---------ANTSKSEAFLLS 139
                          78*******************************************************************.........667778899999 PP

               DUF573  93 kkiWg 97 
                          k+iWg
  GSBRNA2T00037476001 140 KSIWG 144
                          99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014478.89E-53038No hitNo description
PfamPF045045.2E-2160144IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MNLDFPDGTS PPSHIPRSRK SPRKNASKPS PPPPPPPPEP ATEHVTNKKK KKKKALASSS  60
RIWNEEDELT VLKGLVEYQA QKGNEPKSNW GDFYRFVGGS ITGKFSKEQV LTKIRKLKAK  120
FIANMQKANT SKSEAFLLSK SIWGPQSESD QSADHTKSGE EMANHEPSNN EVTKADFEGN  180
EESWVVRDAF ETMVSKGLSD YQKKLQLEKL MNLGSGKRRE LSDEWKELCA EEVKLNIKKF  240
KFSAMLAEAA KW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.45720.0flower| leaf| microspore| microspore-derived embryo| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia (PubMed:12535344, PubMed:18162594). Not detected in emerging or mature leaves (PubMed:12535344). Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots (PubMed:18162594). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:18162594}.
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:21875893, ECO:0000269|PubMed:29192025, ECO:0000305|PubMed:18162594}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037476001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269|PubMed:12535344}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644104.10.0GLABROUS1 enhancer-binding protein-like
SwissprotQ9ASZ19e-56STKLO_ARATH; GLABROUS1 enhancer-binding protein
TrEMBLA0A078J7J10.0A0A078J7J1_BRANA; BnaCnng40730D protein
TrEMBLA0A3P5ZUQ50.0A0A3P5ZUQ5_BRACM; Uncharacterized protein (Fragment)
STRINGBo6g064770.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.15e-57DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Nietzsche M,Schießl I,Börnke F
    The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants.
    Front Plant Sci, 2014. 5: p. 54
    [PMID:24600465]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]