PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037593001
Common NameGSBRNA2T00037593001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 159aa    MW: 18261.6 Da    PI: 7.6359
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037593001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.95.6e-081054244
                  NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikev.diykveP 44
                          pGfr hPtdeel+++yLk ++  ++l+ ++  i+++ +i ++ P
  GSBRNA2T00037593001 10 SPGFRLHPTDEELLHYYLKTRILPTSLRWKTNgISSAkRIENTRP 54
                         69*******************999887765555666655666666 PP
2NAM70.64e-225411369129
                  NAM  69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          + + ++ rat++g+Wkatg+dk + + + +++g++ktLvfyk ra++g+ktdW+mheyrle
  GSBRNA2T00037593001  54 PGQGQTVRATHEGFWKATGRDKCIRN-SYQKIGMRKTLVFYKRRAHHGQKTDWIMHEYRLE 113
                          4566899******************9.9999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.8731134IPR003441NAC domain
SuperFamilySSF1019411.26E-318129IPR003441NAC domain
PfamPF023652.7E-1911112IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDLSSNGGVS PGFRLHPTDE ELLHYYLKTR ILPTSLRWKT NGISSAKRIE NTRPGQGQTV  60
RATHEGFWKA TGRDKCIRNS YQKIGMRKTL VFYKRRAHHG QKTDWIMHEY RLEDADDPQR  120
NPSMDWVACE DVFSEVIIDV IADVDDVLNG ENHMDARC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-19912920163NAC domain-containing protein 19
3swm_B4e-19912920163NAC domain-containing protein 19
3swm_C4e-19912920163NAC domain-containing protein 19
3swm_D4e-19912920163NAC domain-containing protein 19
3swp_A4e-19912920163NAC domain-containing protein 19
3swp_B4e-19912920163NAC domain-containing protein 19
3swp_C4e-19912920163NAC domain-containing protein 19
3swp_D4e-19912920163NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037593001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192773.18e-52NAC domain containing protein 70
RefseqXP_018456850.19e-52PREDICTED: protein BEARSKIN2-like
RefseqXP_018456855.19e-52PREDICTED: protein BEARSKIN2-like
SwissprotQ9SV877e-53BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A078JDW61e-116A0A078JDW6_BRANA; BnaCnng40940D protein
STRINGBo2g110370.11e-115(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-53NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]