PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037673001
Common NameGSBRNA2T00037673001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 269aa    MW: 29959.9 Da    PI: 8.7035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037673001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-10754345
                         SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                          W+ eE++ + +a++ +  g       W++ a+t++ ++tl+q+k ++q
  GSBRNA2T00037673001  7 TWSREEEKSFENAIAIHCVGeeiteeKWSKMASTVP-TKTLEQVKKHYQ 54
                         6****************99999**************.***********9 PP
2Myb_DNA-binding43.29.4e-1499143347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  GSBRNA2T00037673001  99 PWTEEEHRLFLLGLEKFGKGDWRSISRNFVITRTPTQVASHAQKY 143
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.572361IPR017884SANT domain
SMARTSM007171.5E-4459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-6658IPR009057Homeodomain-like
CDDcd001676.91E-7757No hitNo description
PfamPF002498.7E-7754IPR001005SANT/Myb domain
SuperFamilySSF466892.94E-9864IPR009057Homeodomain-like
PROSITE profilePS5129415.96492148IPR017930Myb domain
SuperFamilySSF466892.94E-1795149IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1796146IPR006447Myb domain, plants
SMARTSM007171.3E-1196146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1197142IPR009057Homeodomain-like
CDDcd001674.75E-1199144No hitNo description
PfamPF002492.8E-1299143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MESVAVTWSR EEEKSFENAI AIHCVGEEIT EEKWSKMAST VPTKTLEQVK KHYQILLEDV  60
KAIENGQVPL PRYHRTGDEA SPANRDCHSS EETKPRRIPW TEEEHRLFLL GLEKFGKGDW  120
RSISRNFVIT RTPTQVASHA QKYFIRLNSM NRDRRRSSIH DITSVNNQAP AVTGQQQQQV  180
AKPRPAQPQP HHPTMAGVGM YGGAPVGQPI IAPPDHMGSA VGTPVMLPPP MGAHHHHHPH  240
HLGVAPYAVP AYPVPPIPQQ HPTPSTMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-158771177RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.239101e-126vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037673001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0869064e-91AY086906.1 Arabidopsis thaliana clone 29302 mRNA, complete sequence.
GenBankAY5195284e-91AY519528.1 Arabidopsis thaliana MYB transcription factor (At1g49010) mRNA, complete cds.
GenBankBT0248624e-91BT024862.1 Arabidopsis thaliana At1g49010 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640827.10.0transcription factor MYBS1-like
SwissprotQ9FNN61e-69SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A078JB410.0A0A078JB41_BRANA; BnaA06g03350D protein
STRINGBra018772.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-112MYB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]