PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037737001
Common NameGSBRNA2T00037737001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 293aa    MW: 33311.9 Da    PI: 4.8355
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037737001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.3e-051912291154
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++ +++  L++l+ +      +K + a++L  A+eYIk L
  GSBRNA2T00037737001 191 VRKEKLGDRITALQQLVSPF-----GKTDTASVLHDAIEYIKFL 229
                          577888999********998.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.725180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-10189237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-6190233No hitNo description
Gene3DG3DSA:4.10.280.106.3E-9194234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTEEFETVGV RTGPWWSFPN GMFSGLSQPH STEISIDIGG FEWQNIDNID AETYDKSYTS  60
TLSSNTNLDS TSQVNAWNQY NHREEERFDP ISSFLEGLFD NSELSVPSVK RELLESFHFF  120
EDVFLNESRT VSVFDHEIGD KHEEENQAWK SLITCKRTSE KTKDLEDIES LPPLKRPRLE  180
TPTQFPSFKK VRKEKLGDRI TALQQLVSPF GKTDTASVLH DAIEYIKFLR EQITVSSNPQ  240
LNSKGSGEQK QRSYNGTHAE DSSPRQDLRS RGLCLMPISS TFSTSPLHFG LI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mature root endodermis. {ECO:0000269|PubMed:16581911}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037737001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1045301e-112EF104530.1 Brassica rapa clone E30_5 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594410.10.0PREDICTED: transcription factor bHLH103 isoform X1
SwissprotQ8VZ221e-132BH103_ARATH; Transcription factor bHLH103
TrEMBLA0A078J7X30.0A0A078J7X3_BRANA; BnaC01g41100D protein
STRINGBo1g024090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147121418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.11e-125bHLH family protein
Publications ? help Back to Top
  1. Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D
    Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates.
    Genet. Res., 2006. 88(1): p. 45-56
    [PMID:17014743]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]