PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037853001
Common NameGSBRNA2T00037853001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 201aa    MW: 23270.6 Da    PI: 7.8076
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037853001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.56.4e-1220541649
                         HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEE CS
               SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstgkl.yey 49
                         R ++ilKKA ELS+LC+ e++vi    +g+l  +y
  GSBRNA2T00037853001 20 REKTILKKALELSILCENEICVIHCDREGNLvNTY 54
                         99**********************99999872455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.53E-121791IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.832057IPR002100Transcription factor, MADS-box
PfamPF003196.8E-62050IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MNFSLLIPKQ TAPKSFLLLR EKTILKKALE LSILCENEIC VIHCDREGNL VNTYPEDQCQ  60
VKDILKRYNR LSDREKIKKN TNLSQFYNKK LVDEKRRALT DAEERKKFTK KVGDFKGSLQ  120
DQFLILQDRA RDLLYSQDHQ TEPDQSRCLA AMSEQNHNFP APSSGFFPHN DFSFSLIDED  180
PLMKFCPPVI DNLVSDINNK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037853001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108472.11e-114PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLA0A078JAX51e-144A0A078JAX5_BRANA; BnaC06g40940D protein
TrEMBLA0A0D3CPC71e-144A0A0D3CPC7_BRAOL; Uncharacterized protein
STRINGBo6g015860.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.12e-30AGAMOUS-like 89
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]