PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00038171001

Common Name

GSBRNA2T00038171001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 334aa MW: 37346.4 Da PI: 7.4045

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00038171001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.3	1.5e-33	173	230	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp++v++tYeg+H+h+ GSBRNA2T00038171001 173 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTHN 230 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	1.3E-103	1	333	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	4.4E-34	157	230	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-29	164	231	IPR003657	WRKY domain
PROSITE profile	PS50811	30.412	167	232	IPR003657	WRKY domain
SMART	SM00774	6.7E-39	172	231	IPR003657	WRKY domain
Pfam	PF03106	7.2E-26	173	229	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0009733	Biological Process	response to auxin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MEFTSFYHPS SLSVWEFGDL MAAERDSFEL LGSQQHHQLQ DIAAASPHSF LLETLQPQTQ 60 PFVKLPSADS TIFQAPPSNG NATADKSVTS RVESFCSDHF LINSPATPNS SSFSSASSED 120 ANEEKAKRED QEEEEGHKKS DTNKQVKPKN NSLKRQREPR VAFMTKSEVD HLEDGYRWRK 180 YGQKAVKNSP FPRSYYRCTT ASCNVKKRVE RSFRDPSTVV TTYEGQHTHN ISPLMSRPVP 240 GGGFFGSSGV ASNLGGNFGF PMESSTLIAP RFQQLVRYHQ QQEVLSCFGG VGQYVNSHTH 300 GYGDDERVKK SRRLVRDNGL LQDVVPCHML KEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-28	162	231	7	76	Probable WRKY transcription factor 4
2lex_A	6e-28	162	231	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00069	PBM	Transfer from AT2G47260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00038171001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430041	0.0	KF430041.1 Brassica rapa WRKY transcription factor 23 (WRKY23) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013636457.1	0.0	PREDICTED: probable WRKY transcription factor 23
Refseq	XP_013748716.2	0.0	probable WRKY transcription factor 23
Swissprot	O22900	1e-142	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A078GLM7	0.0	A0A078GLM7_BRANA; BnaC04g51410D protein
STRING	Bo4g198560.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6152	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	1e-122	WRKY DNA-binding protein 23

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]