PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038220001
Common NameGSBRNA2T00038220001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 387aa    MW: 43077.7 Da    PI: 8.7309
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038220001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA542.2e-17312347134
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  GSBRNA2T00038220001 312 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKG 347
                          *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.9E-11166201IPR010399Tify domain
PROSITE profilePS5132014.134166201IPR010399Tify domain
PfamPF062001.4E-10169200IPR010399Tify domain
PfamPF062032.3E-15236278IPR010402CCT domain
PROSITE profilePS5101713.066236278IPR010402CCT domain
PROSITE profilePS501149.222306354IPR000679Zinc finger, GATA-type
SMARTSM004017.1E-11306359IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-13309364No hitNo description
Gene3DG3DSA:3.30.50.101.8E-15311353IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.1E-15312347IPR000679Zinc finger, GATA-type
PROSITE patternPS003440312339IPR000679Zinc finger, GATA-type
CDDcd002022.14E-14312354No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MFLKLMDRFM LRQWSHFEDL ISNSARVLRQ RRDDYAEFVG KAVRKGIVLQ VKKFWLRNLF  60
VLLCSRFTKL QEEIVRSLSG DAAPFVVKPA LKMSETMDDD LHGNNGGMHN GGGVQDPNHS  120
MHVQYDHHGM MDEQHADDVM NEGLEADIPS HLGNTSDHRG EVVDRGSENG DQLTLSFQGQ  180
VYVFDRVLPE KVQAVLLLLG GREVPNTVPT TVGSPHQNNR VLGLSGTPQR FSAPQRQASL  240
LRFREKRKGR NFDKTIRYTV RKEVALRMQR KKGQFTSAKS SNEDSASNGS DWGSGQSWAL  300
EGTETQKPEA LCRHCGTSEK STPMMRRGPE GPRTLCNACG LMWANKGALR DLSKAPPPPT  360
AQNLPANKID ESILEAELAG DISNSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.76370.0flower| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00038220001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639903.10.0GATA transcription factor 24-like isoform X1
RefseqXP_013672496.10.0GATA transcription factor 24-like isoform X1
SwissprotQ8GXL71e-164GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A078GSH80.0A0A078GSH8_BRANA; BnaC01g32210D protein
STRINGBra023900.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-161ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]