PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00038423001

Common Name

GSBRNA2T00038423001, LOC106449728

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 305aa MW: 34252.5 Da PI: 5.0961

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00038423001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	124.5	4.8e-39	104	199	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 fqr+w+eeDei++LqG+idfk++tg+sp++d +a+y+ vkks+sf+v+k+q++eKir KkKf+++ + +k+gk+psfsk+hd+k+f+l GSBRNA2T00038423001 104 FQRVWTEEDEIAVLQGIIDFKNETGSSPYEDKNALYDLVKKSVSFDVTKTQFMEKIRASKKKFENNLGRgKKKGKDPSFSKAHDRKAFDL 193 9*****************************************************************98899************* PP DUF573 92 skkiWg 97 +k +Wg GSBRNA2T00038423001 194 AKLVWG 199 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.1E-33	104	199	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MSGKLLKKLE DPPIASSSSE EEEDEDAVAN SSSEEEEEEE AEPVAKPLVK PPANSIKVET 60 SSKPETKKKR SSETDEVEAK RVKRVSGEDD KKSTGEEETK KSCFQRVWTE EDEIAVLQGI 120 IDFKNETGSS PYEDKNALYD LVKKSVSFDV TKTQFMEKIR ASKKKFENNL GRGKKKGKDP 180 SFSKAHDRKA FDLAKLVWGD NGIMALEPLS AVKSKKVEPA VKKQEEPVAV MNQEFVPIVD 240 LVARFGVDDL AAKQGWSRLS SKDRERFEEQ WKELQLKEFK LYSQKSGFIN EVVTKMAEAS 300 QPDH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28116	0.0	microspore-derived embryo\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00038423001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013746891.1	0.0	probable transcription factor At1g11510 isoform X1
Refseq	XP_022573839.1	0.0	probable transcription factor At1g11510 isoform X2
Swissprot	C0SUU6	1e-64	STKLA_ARATH; Probable transcription factor At1g11510
TrEMBL	A0A078GR76	0.0	A0A078GR76_BRANA; BnaUnng00070D protein
STRING	Bra025445.1-P	1e-177	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	1e-54	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Entrez Gene	106449728

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]