PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00038536001

Common Name

GSBRNA2T00038536001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 268aa MW: 31209.1 Da PI: 8.7138

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00038536001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.6	2.8e-17	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ tf kR++g +KK +ELSvLC+++++ +i+s+ GSBRNA2T00038536001 11 ITNDSMRKSTFNKRKKGFFKKIHELSVLCGIQACAVIYSP 50 89************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.4E-23	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.353	1	49	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.51E-34	2	85	No hit	No description
SuperFamily	SSF55455	4.06E-24	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.2E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-16	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.2E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MTRKKLNISY ITNDSMRKST FNKRKKGFFK KIHELSVLCG IQACAVIYSP FSSTPDVWPS 60 NSEAKKVVEK FEEIPKIDQE KKMVNHEGFL RDSITKTRET TIKKMMDNTE SAMNETMFQF 120 LRGRGDMFQL TDKHRDDLCR HIDQHLKELY HHRKLILNQS HLEYGESSSA ANAMTQPAAI 180 AEEGYYQMTN PVGGYHQHPS LNLNFNPNQY QQKFVGYPNV AQDGNYSGIQ NQNHQQEEWL 240 VSQMINNSNQ VRFPMMDDNN RYNYHQP*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269\|PubMed:16798889}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00038536001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009147196.1	0.0	PREDICTED: agamous-like MADS-box protein AGL80 isoform X1
Swissprot	Q9FJK3	4e-49	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A078GME9	0.0	A0A078GME9_BRANA; BnaA05g31440D protein
STRING	Bra039404.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.1	1e-107	M-type_MADS family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]