PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00038579001

Common Name

GSBRNA2T00038579001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 1036aa MW: 115859 Da PI: 9.702

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00038579001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.3e-07	45	77	3	36
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 WT+ E e+++d+ +++G + W+++a+ + + R+ GSBRNA2T00038579001 45 QWTKAELERFYDYYRKYGQD-WRKVAAAIRNSRS 77 6***************99.***99886666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.09E-7	44	92	IPR009057	Homeodomain-like
CDD	cd00167	0.00667	46	89	No hit	No description
Pfam	PF06584	4.8E-32	620	720	IPR033471	DIRP domain
SMART	SM01135	3.2E-61	620	721	IPR033471	DIRP domain
SMART	SM00333	0.004	707	764	IPR002999	Tudor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1036 aa Download sequence Send to blast
MAPAVRKSRS VNKRFTNEPS PRKDAGSSRK NKQRKTKFSD KLGPQWTKAE LERFYDYYRK 60 YGQDWRKVAA AIRNSRSVDM VEALFNMNKA YLSLPEGTAS VAGLIAMMTD HYTVMEGSGS 120 EGEGHDVPEA PRKQQKRKRP KPQLSDSREE DDTQHPVAST DGCLKFLKQA RANGTHRRAT 180 GKRTPRVPVQ TSRDDGEGAT PRNKRARKQL DANDDVAAHF LGLTLTDASR REGSPQVSES 240 PNKRTEPSDN SPIKSWGKMS RTRKASREKK LESDREDVEG VGEMEAPRKV KRVYKKRVKV 300 EEAECNDSDD NGGACSATEG SRIKSKRRKA GVGASRGTYS PRSPKEKDNK FTSGDEFDAL 360 QALADLSASL LPGALMESES SAQLKEERIE NDMDEKSSSP DDSHGEKADS EPDDSLLHAI 420 SAIGNVAYSR KPKSSRQLST DCNAVPTEKP EPEPTSGSSK RKRKPKKLWD ETPHESTRKK 480 STNKQKELAQ EDVNMKSSLR TKRSGQVLPP QSKQLKVAKE LEEATTTSDK KRSAMDVVEV 540 ATTKEVSDSG PASLPQKPPN RRKMSLKKSL QERDNKSSET IHKASRSSRS LSEHELLLKD 600 KLSTSLSHPL ARRRCMFEWF YSAIDHPWFA KMEFVDYLNH VGLGHIPRLT RLEWSVIKSS 660 LGRPRRFSER FLQEEREKLK QYRESVRKHY TELRTGAREG LPTDLARPLA VGNRVIAIHP 720 KTREIHDGKI LTVDHSQCNV LFDDVGVELV KDIDCMPLNP LEYMPEGLRR QVDKCLSIKK 780 EAQLSGVSVI FPPCGLENID FSMNQSLNQG DMIAPILHGK VLTNTSSSPH QTNQSHIINY 840 SKGREAEIQR VLALQHALDE KEMEPEMVEI VKGSKTRAQA MVDAAIKAAS SVKEGEDAIK 900 MIQEALDMVG KHQPLRSSVV KHEEHANGGV EHHQNPSLSS DASKPMANND FISQDGSSEK 960 NEVQMPAELI TSCVASWLMI QMCTERQYPP AEVAQLIDTA VTSLQPRCPQ NLPIYREIQM 1020 CMGRIKTQIL SLVPS*

Sequence ? help Back to Top

Protein Sequence Length: 1036 aa Download sequence Send to blast

MAPAVRKSRS VNKRFTNEPS PRKDAGSSRK NKQRKTKFSD KLGPQWTKAE LERFYDYYRK  60
YGQDWRKVAA AIRNSRSVDM VEALFNMNKA YLSLPEGTAS VAGLIAMMTD HYTVMEGSGS  120
EGEGHDVPEA PRKQQKRKRP KPQLSDSREE DDTQHPVAST DGCLKFLKQA RANGTHRRAT  180
GKRTPRVPVQ TSRDDGEGAT PRNKRARKQL DANDDVAAHF LGLTLTDASR REGSPQVSES  240
PNKRTEPSDN SPIKSWGKMS RTRKASREKK LESDREDVEG VGEMEAPRKV KRVYKKRVKV  300
EEAECNDSDD NGGACSATEG SRIKSKRRKA GVGASRGTYS PRSPKEKDNK FTSGDEFDAL  360
QALADLSASL LPGALMESES SAQLKEERIE NDMDEKSSSP DDSHGEKADS EPDDSLLHAI  420
SAIGNVAYSR KPKSSRQLST DCNAVPTEKP EPEPTSGSSK RKRKPKKLWD ETPHESTRKK  480
STNKQKELAQ EDVNMKSSLR TKRSGQVLPP QSKQLKVAKE LEEATTTSDK KRSAMDVVEV  540
ATTKEVSDSG PASLPQKPPN RRKMSLKKSL QERDNKSSET IHKASRSSRS LSEHELLLKD  600
KLSTSLSHPL ARRRCMFEWF YSAIDHPWFA KMEFVDYLNH VGLGHIPRLT RLEWSVIKSS  660
LGRPRRFSER FLQEEREKLK QYRESVRKHY TELRTGAREG LPTDLARPLA VGNRVIAIHP  720
KTREIHDGKI LTVDHSQCNV LFDDVGVELV KDIDCMPLNP LEYMPEGLRR QVDKCLSIKK  780
EAQLSGVSVI FPPCGLENID FSMNQSLNQG DMIAPILHGK VLTNTSSSPH QTNQSHIINY  840
SKGREAEIQR VLALQHALDE KEMEPEMVEI VKGSKTRAQA MVDAAIKAAS SVKEGEDAIK  900
MIQEALDMVG KHQPLRSSVV KHEEHANGGV EHHQNPSLSS DASKPMANND FISQDGSSEK  960
NEVQMPAELI TSCVASWLMI QMCTERQYPP AEVAQLIDTA VTSLQPRCPQ NLPIYREIQM  1020
CMGRIKTQIL SLVPS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	141	QKRKRPKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.8743	0.0	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00038579001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018514552.1	0.0	PREDICTED: protein ALWAYS EARLY 2
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A078GT43	0.0	A0A078GT43_BRANA; BnaA05g31820D protein
STRING	Bra039443.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-79	DNA binding

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]