PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00038612001

Common Name

GSBRNA2T00038612001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 395aa MW: 45099.2 Da PI: 7.7801

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00038612001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.4	1.1e-10	345	393	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 + WT+eE l ++vk++G+ Wk I + + Rt+ ++k++w+++l GSBRNA2T00038612001 345 KFWTPEEVAVLREGVKEYGKS-WKEIKNANPevlAERTEVDLKDKWRNLL 393 67***************88.********99**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.926	339	394	IPR017930	Myb domain
SuperFamily	SSF46689	7.33E-13	341	394	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-13	341	394	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-4	343	394	IPR001005	SANT/Myb domain
CDD	cd11660	5.63E-15	345	394	No hit	No description
Pfam	PF00249	4.2E-8	347	393	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MKVMDKWVAE FFIRCQKNPR VSPTNLLSAL KFRESAGDCS YLKKSSVLRE ISDSLIRGNV 60 AEGTLDLLET LEKLHRGSVL TESHKFAYCW TAVECTVRLM WPLSASEGLY GDAVERIWTK 120 RIGVLKERGS GLVSEELLKW EADLRKAVED DEVYKRIRES NVRYSAVCFL NQLLKEQWAV 180 LGSCSLESVA QRMLLKSRKA VDKGTRRLDE GEKENGEDNR DVHGVECPQH AAGEEEERTM 240 GVQEQEHEPS LDEGDKMVAR ELKDFLLEIQ RQMDPSFTRQ LQEPNNANIT TPQPSRRVNS 300 TGTSGQQQDS ASENRVRPHL PTPEPLNVSP LKKKRANPVA RRIKKFWTPE EVAVLREGVK 360 EYGKSWKEIK NANPEVLAER TEVDLKDKWR NLLR*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MKVMDKWVAE FFIRCQKNPR VSPTNLLSAL KFRESAGDCS YLKKSSVLRE ISDSLIRGNV  60
AEGTLDLLET LEKLHRGSVL TESHKFAYCW TAVECTVRLM WPLSASEGLY GDAVERIWTK  120
RIGVLKERGS GLVSEELLKW EADLRKAVED DEVYKRIRES NVRYSAVCFL NQLLKEQWAV  180
LGSCSLESVA QRMLLKSRKA VDKGTRRLDE GEKENGEDNR DVHGVECPQH AAGEEEERTM  240
GVQEQEHEPS LDEGDKMVAR ELKDFLLEIQ RQMDPSFTRQ LQEPNNANIT TPQPSRRVNS  300
TGTSGQQQDS ASENRVRPHL PTPEPLNVSP LKKKRANPVA RRIKKFWTPE EVAVLREGVK  360
EYGKSWKEIK NANPEVLAER TEVDLKDKWR NLLR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00038612001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	S84968	3e-74	S84968.1 Bcg4-4=acyl carrier protein [Brassica rapa, Genomic, 3898 nt].

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013750749.1	0.0	uncharacterized protein BNAA05G32140D isoform X1
TrEMBL	A0A078GMK0	0.0	A0A078GMK0_BRANA; BnaA05g32140D protein
STRING	Bra039470.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7720	17	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	1e-153	MYB_related family protein

Link Out ? help Back to Top
Entrez Gene	106453067

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]