PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038753001
Common NameGSBRNA2T00038753001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 320aa    MW: 36051 Da    PI: 7.1902
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038753001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.82.4e-122364646
                         HHHHHHHH.HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
               SRF-TF  6 ksnrqvtf.skRrngilKKAeELSvLCdaevaviifsstgkl 46
                         +++ + +f   R ++ilKKA ELS+LCd +++v+ +  +g+l
  GSBRNA2T00038753001 23 QTRFKKSFlLLREKTILKKALELSILCDNDICVVHYDREGNL 64
                         444333431349************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00651170IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-1322105IPR002100Transcription factor, MADS-box
PfamPF003193.2E-73464IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.1663464IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDSLSSSTST KMKSNNKLSV RNQTRFKKSF LLLREKTILK KALELSILCD NDICVVHYDR  60
EGNLVNAYPE DQSQVKDILE RYNRLSDREK IKKNTNLSQF YNKKLVDEKR RSLTDAEERK  120
RFTKKVGEFK GSLLDQLLVL QDRARYLLYS QDHQTEPDQS RFIAAMSEQN HNFSAPSSGF  180
FPHNDFSSSL IDEEDPLMSF CPPVINNPVS DHQQQIGSSL TNLLMSGDAS GSSNDRSKFS  240
MFLFNHETAT FTQLPNSVSS SFDQGLTPCS NNLITASHGA QDYNFGYGNS HSSQGFNFGC  300
SNNLNTQGFN FGCNNNLCT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00038753001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659405.20.0agamous-like MADS-box protein AGL93
TrEMBLA0A078GMT10.0A0A078GMT1_BRANA; BnaA07g04800D protein
TrEMBLA0A3P6B2J80.0A0A3P6B2J8_BRACM; Uncharacterized protein
STRINGBra015129.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26950.16e-40AGAMOUS-like 93
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]