PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038812001
Common NameGSBRNA2T00038812001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 191aa    MW: 21035.6 Da    PI: 4.4246
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038812001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.81.5e-09751003055
                  AP2  30 rfslgkfgtaeeAakaaiaarkkleg 55 
                           ++lg+f+ta eAa+a+++a+ +l+g
  GSBRNA2T00038812001  75 LVWLGTFDTAIEAARAYDQAAFRLRG 100
                          58**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.63E-1663108No hitNo description
SMARTSM003804.2E-768114IPR001471AP2/ERF domain
PfamPF008471.2E-575100IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1075110IPR016177DNA-binding domain
PROSITE profilePS5103212.12876108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-1576109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MATPSEASAL SFIKKHLLDE SSPLPKVTTT NPWIASETIS NFSIFGSFDQ TGFDFSEFET  60
KPEITDLVTH RFTDLVWLGT FDTAIEAARA YDQAAFRLRG SKAIVNFPLE VGTWNQRADV  120
GQNKRKRDGE GEEVTVVAKV LKTEESHAVE TETSSLTAVD DWDLTELLSM PLLSPLSPHP  180
PFGYPQLTVV *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00038812001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367911e-179AC236791.1 Brassica napus clone JBr38I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013655947.11e-64ethylene-responsive transcription factor 6
SwissprotQ8VZ911e-50EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLA0A078GRZ31e-135A0A078GRZ3_BRANA; BnaCnng05070D protein
STRINGBo8g049450.12e-65(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-39ethylene responsive element binding factor 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]