PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038984001
Common NameGSBRNA2T00038984001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 201aa    MW: 22956.3 Da    PI: 10.2573
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038984001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1958.9e-3029117190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY++YAk++GF +r+++ ++s r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka ++vkk+k+gkw vtk+++eHnH+l 
  GSBRNA2T00038984001  29 SFYDSYAKSTGFVMRVDAFRRSMRDGTVVWRKLVCNKEGFRRSRPRR-SESRKPRAITREGCKALIVVKKDKSGKWIVTKFVKEHNHPLL 117
                          5********************************************99.9***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-2829117IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MENIVTEEAS SVVEPFIGME FESEEAAKSF YDSYAKSTGF VMRVDAFRRS MRDGTVVWRK  60
LVCNKEGFRR SRPRRSESRK PRAITREGCK ALIVVKKDKS GKWIVTKFVK EHNHPLLSLL  120
ANARRSSHIS QSPDEKDAKI RELSTELSRE RKRCAALQQQ LDMVLNVMEE HANHLSVNIN  180
NVIQSVKEIE SITFTKSLIS *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00038984001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583896.11e-146PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_013696015.11e-146protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL82e-29FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A078GSB11e-145A0A078GSB1_BRANA; BnaC05g44460D protein
TrEMBLA0A0D3CM131e-145A0A0D3CM13_BRAOL; Uncharacterized protein
STRINGBo5g141470.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135242227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-100FAR1 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]