PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00039036001

Common Name

GSBRNA2T00039036001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 238aa MW: 27133.9 Da PI: 10.5701

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00039036001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.8	2.7e-14	160	210	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ k+ GSBRNA2T00039036001 160 RRQKRMIKNRESAARSRARKQAYTLELEAEIENLKQLNQDLQRKQAEIMKT 210 79***************************************9887776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-11	156	214	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.461	158	209	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-11	160	211	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.4E-13	160	209	No hit	No description
SuperFamily	SSF57959	1.0E-9	160	209	No hit	No description
CDD	cd14707	1.21E-20	160	212	No hit	No description
PROSITE pattern	PS00036	0	163	178	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MNMDELLKNI WTAEETTQPI MTTTSSIASV QQPRGLVQRQ GSLTLPRTLS QKTVDEVWKH 60 LMSKDSCNGR DAPERQETLG EMTLEDFLLR AGVVKEDGNN SSMILNQAQQ PHQQQLQQPH 120 QRLPPTIYPK HANVTFSAPV MGKAGGRRSN TGVVEKVVER RQKRMIKNRE SAARSRARKQ 180 AYTLELEAEI ENLKQLNQDL QRKQAEIMKT QKNEEPSKQR PWLAKTQCLR RTLTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00039036001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX122892	1e-152	JX122892.1 Brassica napus ABA-responsive element binding factor 1 (ABF1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591825.1	1e-149	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X2
Swissprot	Q9M7Q5	9e-99	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	A0A078GTX2	1e-174	A0A078GTX2_BRANA; BnaC06g02640D protein
STRING	Bo6g018480.1	1e-142	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	2e-84	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]