PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00039065001
Common NameGSBRNA2T00039065001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27564.5 Da    PI: 4.1517
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00039065001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.63.3e-131351139
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                         k+i nk  r +tfskRr g+  KA  L+vL da++a++ 
  GSBRNA2T00039065001 13 KKITNKASRATTFSKRRDGLYSKAAQLCVLSDARIAILA 51
                         689*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-14566IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.133556IPR002100Transcription factor, MADS-box
CDDcd002663.52E-19686No hitNo description
PRINTSPR004043.1E-8727IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-17780IPR002100Transcription factor, MADS-box
PfamPF003192.4E-131455IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-82742IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVKGGTKRKP EMKKITNKAS RATTFSKRRD GLYSKAAQLC VLSDARIAIL ATPSSSSNSN  60
ASFFSFGHSS VESVVSAYLA GQRLPPVSSR DTKATREDLG ICVARKDLGL GFWWDDDKLV  120
NSKNPEELME AVESMEVLIK LVKGLEDQTL TTLDQSPDLD EWSEMELTQL LQDCDDVSEN  180
DKVEEDHQTV SDKTCNNNNN NFVSVPEVEA GSLGEEKMDI DWDTFFEGLI SYDDELNDEE  240
LDQLFNN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00039065001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588993.10.0PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6335e-40AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A078GTY90.0A0A078GTY9_BRANA; BnaC06g02840D protein
TrEMBLA0A0D3CPL00.0A0A0D3CPL0_BRAOL; Uncharacterized protein
STRINGBo6g018670.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.13e-44M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]