PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00039071001
Common NameGSBRNA2T00039071001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 452aa    MW: 49874.4 Da    PI: 4.7682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00039071001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028189211123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC  Cgk F++   L  H  +H
  GSBRNA2T00039071001 189 YKCDVCGKEFTSYQALGGHKASH 211
                          9***********99999988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-8188264No hitNo description
PfamPF139121.0E-12189212IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658189211IPR007087Zinc finger, C2H2
SMARTSM003550.0059189211IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.7E-4189211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
PfamPF139123.8E-12242266IPR007087Zinc finger, C2H2
SMARTSM003550.1242264IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDLLLFEALM QLPPSTRATV VKVLDHASQN HPTDHDEDSQ KRRCLQREEE EEEECATGTV  60
CVEPRLESSD QSIDDEYSSS RSSKTVTQEE CEECSRDDDD ETTSPSSSET VEQRMILFKP  120
QQEEYEDDVV STELTLGSSS AKPSRQQEEP SCSSPSEDDT SALLLVELCR IRPMQLQTQT  180
QTPQKFDSYK CDVCGKEFTS YQALGGHKAS HRVKLQQPLV DNANAEAGGQ TRPRMAPSGK  240
IHKCSICHVV FPTGQALGGH KRRHYEGVLS GNKRSHDEVI AGDKSSPNHE SVETKTSSGP  300
MQSIVGDHKR SHDEVIAGDK SSPNHESDVT NMSGRKQSFV GDHKRSHDEV IAGDKSSPNH  360
ESDVTKNPGR SFVGLFDLNE PPLQEFDDNN RQEVDKFESA FVANKTSSSK TIGQNESVPL  420
PGEPHHDSEF NIVVDELGEG ALVRARHNPP P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00039071001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588994.10.0PREDICTED: zinc finger protein ZAT1
RefseqXP_013720599.10.0zinc finger protein ZAT1-like
TrEMBLA0A078GTZ40.0A0A078GTZ4_BRANA; BnaC06g02890D protein
STRINGBo6g018710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-26zinc-finger protein 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]