PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00039169001

Common Name

GSBRNA2T00039169001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 239aa MW: 27155.8 Da PI: 6.6255

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00039169001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	42	85	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T E++++ +++ qlG++ W++Ia+++ gRt++++k++w++ GSBRNA2T00039169001 42 RGGFTDAEEDRIMELHSQLGNR-WSKIASHFS-GRTDNEIKNHWNT 85 788*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.054	23	36	IPR017877	Myb-like domain
SuperFamily	SSF46689	6.84E-22	23	96	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-5	23	35	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-25	36	92	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.127	37	91	IPR017930	Myb domain
SMART	SM00717	5.6E-14	41	89	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-14	42	85	IPR001005	SANT/Myb domain
CDD	cd00167	5.17E-10	45	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MASTAGESSP NLQCLHGHEG LLRCGKSCRL RWINYLRPDL KRGGFTDAEE DRIMELHSQL 60 GNRWSKIASH FSGRTDNEIK NHWNTKIKKK MKHLGLNPAT HEPMNNITNQ PQSMQITKPN 120 MCSTIKEREE TKGQPKDEFI IETKKTSIIS NNDELLLAKN CKTLYAEEVD IRPLFKMQGN 180 ETSVSSLPSL YSNISRSEYS SYLAEDSISL EQWGLTDMTD PLVPWDLLTN LDDTPFLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-19	23	91	40	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00039169001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013635711.1	1e-119	PREDICTED: protein ODORANT1-like
TrEMBL	A0A078JEQ6	1e-177	A0A078JEQ6_BRANA; BnaCnng41840D protein
STRING	Bo2g011790.1	1e-141	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	1e-110	myb domain protein 40

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]