PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00039316001
Common NameGSBRNA2T00039316001, LOC106395033
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 94aa    MW: 10803.3 Da    PI: 9.332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00039316001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.41.9e-0626602154
                         HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 21 eeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          +Lr+ lP+ + + +s K+s + +L+ +++YI++L
  GSBRNA2T00039316001 26 GKLRQFLPEiRERRRSDKVSASKVLQDTCNYIRKL 60
                         69*******999*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.88560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-62174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-62578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSNRIRSRQS SSATRISDDQ MIDLVGKLRQ FLPEIRERRR SDKVSASKVL QDTCNYIRKL  60
HREVDNLSDR LSLLLDSVDE DSQEAAVIRN LLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00039316001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0246402e-90BT024640.1 Arabidopsis thaliana unknown protein (At3g28857) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691017.14e-59transcription factor PRE5-like
SwissprotQ9LJX16e-51PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A078JC259e-58A0A078JC25_BRANA; BnaCnng42180D protein
TrEMBLA0A3P6E3N59e-58A0A3P6E3N5_BRAOL; Uncharacterized protein
STRINGAT3G28857.13e-49(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.19e-39bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]