PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00040094001

Common Name

GSBRNA2T00040094001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 357aa MW: 39382.4 Da PI: 4.8489

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00040094001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.4e-10	276	316	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq GSBRNA2T00040094001 276 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 316 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.85	266	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-14	268	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-12	271	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-11	272	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.51E-12	275	320	No hit	No description
Pfam	PF00010	1.4E-7	276	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEAMGEWSNN LGGMYTYATE EADFMNQLLT SYDHPGTGSS SGTASADHHG LCWSLGSHHN 60 HLTMMPEASS FCFSGESSSY SEYYAVAPPA VRENNNGSMD FDMVDVTINT NSYLVGEETS 120 EYDVEKYSSG KTRLPLGAVL ETHDDEESIL QPEISVTTTD HQKYLTGSKK RSRATSVDKN 180 KKSKVGKRGQ KSFDMSGDDR NGGEEEEGEK VKKRKTGPMM SRQNSSITLC SEDESHCASQ 240 DVGGEEEEDA SKALNLNGKT RASRGAATDP QSLYARKRRE RINERLRILQ NLVPNGTKVD 300 ISTMLEEAVH YVKFLQLQIK LLSSDDMWMY APIAFNGMDI GLNSSRCGTS VYNEDL*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEAMGEWSNN LGGMYTYATE EADFMNQLLT SYDHPGTGSS SGTASADHHG LCWSLGSHHN  60
HLTMMPEASS FCFSGESSSY SEYYAVAPPA VRENNNGSMD FDMVDVTINT NSYLVGEETS  120
EYDVEKYSSG KTRLPLGAVL ETHDDEESIL QPEISVTTTD HQKYLTGSKK RSRATSVDKN  180
KKSKVGKRGQ KSFDMSGDDR NGGEEEEGEK VKKRKTGPMM SRQNSSITLC SEDESHCASQ  240
DVGGEEEEDA SKALNLNGKT RASRGAATDP QSLYARKRRE RINERLRILQ NLVPNGTKVD  300
ISTMLEEAVH YVKFLQLQIK LLSSDDMWMY APIAFNGMDI GLNSSRCGTS VYNEDL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Roots. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00040094001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013654864.1	0.0	transcription factor bHLH85-like isoform X2
Swissprot	Q84WK0	0.0	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A078GUK7	0.0	A0A078GUK7_BRANA; BnaC03g66310D protein
STRING	Bo3g169400.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2834	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	1e-163	ROOT HAIR DEFECTIVE 6-LIKE 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]