PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00040227001
Common NameGSBRNA2T00040227001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 579aa    MW: 64816.1 Da    PI: 4.7416
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00040227001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.89.3e-49131392128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i  vd+ykv+P +Lp  + +k+++++w++F++r++ky++  r++r t++gyWkatgkd
  GSBRNA2T00040227001  13 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDVYKVDPTELPglSVLKSGDRQWFYFTPRNRKYPNAARSSRGTATGYWKATGKD 101
                          69***************************.89***************644888899********************************** PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + ++  +++ vglkktLvfy+grap+ge+tdWvmhey++
  GSBRNA2T00040227001 102 RIIVY-NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 139
                          ****9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.86912162IPR003441NAC domain
SuperFamilySSF1019411.83E-5512162IPR003441NAC domain
PfamPF023652.3E-2514138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MANSCLKEGR FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDVY KVDPTELPGL  60
SVLKSGDRQW FYFTPRNRKY PNAARSSRGT ATGYWKATGK DRIIVYNSRS VGLKKTLVFY  120
RGRAPNGERT DWVMHEYTMD EEELGRCKNA KEYYALYKLY KKSGAGPKNG EEYGAPFQEE  180
EWVDDDDDRE EADNVAVLDD HVVRYENNPR VDDGVFCNPV NVRSDDFNKL LNEIPYAPGL  240
APRQMNELSG VMQVNNEEEI QSTLLNNSSG EFLAPSEVGM FLPNYQPNSM HSSYQSHAAN  300
SFDATEVKSA FNASGMAPFL FEKEDYIEID DLLTPEKGAA SVEKPAQFLN PGEYEHFNDY  360
DQLFHDVSMS FDLEPVFQGT STDLTSLSNF ADNGRQHFLY QQQFQNQTLE SQANSFMDPN  420
PNVNQFIDDM WFKDAQADLY DQTQSSSLAF ASPSSGVMPE SKNPVMSVNA QEQECQNGGE  480
TSSQFSSAMW ALLDSIPSTP ASACEGPLNR TFVRMSSLSR IRFSATSVTT SKVTAAKKGI  540
GNRGFLLLSV VGALCAIFWV FIIATVGVQG RHRDLNLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-441413917140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:23926065}.
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00040227001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145148.10.0PREDICTED: NAC domain-containing protein 16
RefseqXP_009145149.10.0PREDICTED: NAC domain-containing protein 16
RefseqXP_009145150.10.0PREDICTED: NAC domain-containing protein 16
RefseqXP_009145151.10.0PREDICTED: NAC domain-containing protein 16
SwissprotA4FVP60.0NAC16_ARATH; NAC domain-containing protein 16
TrEMBLA0A078GTE20.0A0A078GTE2_BRANA; BnaA05g18430D protein
TrEMBLA0A397ZHR70.0A0A397ZHR7_BRACM; Uncharacterized protein
TrEMBLM4F0460.0M4F046_BRARP; Uncharacterized protein
STRINGBra034439.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.10.0NAC domain containing protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]