PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00040515001

Common Name

GSBRNA2T00040515001, LOC106435221

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 335aa MW: 37761.7 Da PI: 7.6371

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00040515001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.8e-32	24	78	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl GSBRNA2T00040515001 24 KPRLKWTCELHHRFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 78 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-28	22	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-15	23	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-22	24	79	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-6	26	77	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-22	126	172	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MESNTNNGNN HKAKVSLVLS TDAKPRLKWT CELHHRFIEA VNQLGGPNKA TPKGLMKAME 60 IPGLTLYHLK SHLQKYRLGK SLKFDDNKLE VSSASETQEA ESKNDSGDFR GNVNQENNDP 120 ANEGLKITEA LQLQMEVQKK LHEQIEVQRH LQVKIEAQGK YLQSVLMKAQ QTLAGYTSAS 180 LGMDFARSEL SRLASMMNPS SSFSELTQVE DYEEEGFLWC KKTENRGIRQ PRRSVESSLT 240 SSESSETKLN NNNEERKSME LPLMEIKSEV MTAKKTKRSL NDVLCVEHQP LKKRDFGVDD 300 DDEQHLRLSL NSYKKDMGTC PNMDLGLSGK KTLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-19	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-19	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-19	24	80	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	24	80	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	24	80	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	24	80	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-19	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-19	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-19	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-19	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-19	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-19	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00040515001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013731542.1	0.0	myb family transcription factor PHL8 isoform X2
Swissprot	F4I274	1e-169	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A078GTS7	0.0	A0A078GTS7_BRANA; BnaC02g19330D protein
STRING	Bo2g064200.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-167	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	106435221

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]