PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00040675001

Common Name

GSBRNA2T00040675001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 326aa MW: 37803.6 Da PI: 6.3167

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00040675001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	32.2	3.1e-10	19	133	11	128
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 de ++ +yLk+ +++ +++ +++d+++ +P++ + +++ f + + ++++ gk + g W+ +dk + ++ +g+l GSBRNA2T00040675001 19 DELMLLRYLKPMIDDGASWPQHFAEDADVFNKNPSTVF-----NPENTVFLIVKPRTETCGKTDG--CEYGSWRIMVRDKLIRNEeTGKL 101 5556789****99996666779999*****95.....4456677788878777665544..4689*******99878889 PP NAM 100 vglkktLvfy.kgrapkge..ktdWvmheyrl 128 g kk+L f k+++ +g+ k +Wvm+eyrl GSBRNA2T00040675001 102 LGFKKILKFCvKKTKTRGReyKRSWVMEEYRL 133 *****96334444444499*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	19.74	9	148	IPR003441	NAC domain
SuperFamily	SSF101941	9.55E-19	19	146	IPR003441	NAC domain
Pfam	PF02365	2.3E-6	20	133	IPR003441	NAC domain
PROSITE profile	PS51005	15.473	174	323	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-20	176	321	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MAAADDYLEI KDELMGAGDE LMLLRYLKPM IDDGASWPQH FAEDADVFNK NPSTVFNPEN 60 TVFLIVKPRT ETCGKTDGCE YGSWRIMVRD KLIRNEETGK LLGFKKILKF CVKKTKTRGR 120 EYKRSWVMEE YRLPNPKQDH VICKIRLLFQ TEIGFLLFKH FSYSCGPLPA KQSLPAYGYG 180 FPNPEDEGAY YLQSLIDHEN EWPSYVTNDV YCMHPSALVD PHRDQMFARF GLCIFANRTE 240 ACGYTDGCES GCWRIMEGDK PISSIMVGEM FGYRRVFKFC EKDIDKHLGK VDGEVMFLTW 300 IMEEYRLAEE EMKDKVLCVI KLHRR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11116	0.0	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00040675001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013673351.1	0.0	uncharacterized protein LOC106377633
TrEMBL	A0A078GU41	0.0	A0A078GU41_BRANA; BnaC09g32530D protein
STRING	Bo9g123430.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3704	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60280.1	1e-113	NAC domain containing protein 23

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]