PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00040967001
Common NameGSBRNA2T00040967001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 311aa    MW: 33871.6 Da    PI: 4.7142
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00040967001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.76e-36371292103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+ ++elisw+e+g++f+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k
  GSBRNA2T00040967001  37 FLTKTYQLVDDPVYDELISWNEDGSTFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEK 117
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                           ll++i+r+k +
  GSBRNA2T00040967001 118 ILLRDIQRRKIS 129
                          *********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-5733126IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3734126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-3434126IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3137126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1703.2E-5178206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MPGEQTGEVG GGCSAGNSGG SSGGGGGESQ RSIPTPFLTK TYQLVDDPVY DELISWNEDG  60
STFIVWKPAE FARDLLPKYF KHNNFSSFVR QLNTYGFRKV VPDRWEFSND CFRRGEKILL  120
RDIQRRKISQ PAMAAAAAPV LAHVQVISSN SSPAGTGGGG GSVSVALQRT TSCTTAPELM  180
EENERLRKEN VQLSQELTKL KGLYSNIYKL MSNFTSGGAD CAKTLDLMPE RQEMSEEAIE  240
TGTGLKLLTP RLFGVSIGVK RARRDHELGA AAVEEDDNQE EEEQGSDDKS EPMEENNSVD  300
HNGPWLELGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-272412617129Heat shock factor protein 1
5d5v_B3e-272412617129Heat shock factor protein 1
5d5v_D3e-272412617129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00040967001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325470.0AC232547.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013684117.10.0heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-134HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A078JFA60.0A0A078JFA6_BRANA; BnaC03g73070D protein
STRINGBo3g045370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-74heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]