PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041004001
Common NameGSBRNA2T00041004001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 242aa    MW: 27190.8 Da    PI: 8.4826
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041004001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.2e-18122176256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++tk+q  +Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  GSBRNA2T00041004001 122 RKKLRLTKQQSIVLEENFKMHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTK 176
                          788899***********************************************98 PP
2HD-ZIP_I/II121.44.5e-39122211191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+k+q+ +LEe+F+++++L+p++K++lar+L l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +
  GSBRNA2T00041004001 122 RKKLRLTKQQSIVLEENFKMHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTKLKQTEMDCEFLKKCCETLTDENRRLQKELQDLK-A 210
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  GSBRNA2T00041004001 211 L 211
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0022103846IPR022357Major intrinsic protein, conserved site
PROSITE profilePS5007116.844118178IPR001356Homeobox domain
SuperFamilySSF466891.11E-17120186IPR009057Homeodomain-like
SMARTSM003898.6E-14120182IPR001356Homeobox domain
PfamPF000461.9E-15122176IPR001356Homeobox domain
CDDcd000861.61E-14122179No hitNo description
Gene3DG3DSA:1.10.10.604.8E-16122176IPR009057Homeodomain-like
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PfamPF021836.8E-10178212IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.4E-25178221IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006810Biological Processtransport
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005215Molecular Functiontransporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGLDDSCNTG LVLGLGLSPT HNSYNYAIKK SSATVDHHVN PSLTLSLSGE SYKVEKTVSG  60
AGDQIYRQTS SHSGISSFSS GRIKREREVC GDGEEEAEET EKRVVCSRVR DDHEDEEGVS  120
ARKKLRLTKQ QSIVLEENFK MHSTLNPKQK QALARQLSLR PRQVEVWFQN RRARTKLKQT  180
EMDCEFLKKC CETLTDENRR LQKELQDLKA LKMSQPFYMH IPPATLIGAF SIPFINPSAA  240
C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170178RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.235286e-57flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041004001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412540.0AJ441254.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013685562.11e-157homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-129HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A078JG621e-180A0A078JG62_BRANA; BnaAnng19250D protein
STRINGBra010612.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-120HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]