PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041046001
Common NameGSBRNA2T00041046001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 372aa    MW: 41294.6 Da    PI: 6.4042
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041046001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.81.4e-05234335
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                         e+kC+ +   +++++C+ +   lC +C ++ H+
  GSBRNA2T00041046001  2 EPKCDYCATTQAIIYCKYDLAKLCLKCDVHVHS 34
                         689******99******************9994 PP
2CCT62.41.4e-21314357144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a+lRYkeK+ +R F K+irY+sRKa+A++R+RvKGrFvk+ 
  GSBRNA2T00041046001 314 RNEAKLRYKEKKLKRTFGKQIRYASRKARADTRKRVKGRFVKAG 357
                          99***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.5E-6147IPR000315B-box-type zinc finger
CDDcd000210.00815334No hitNo description
PfamPF062035.0E-16314356IPR010402CCT domain
PROSITE profilePS5101714.436314356IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEPKCDYCAT TQAIIYCKYD LAKLCLKCDV HVHSPNPLSR RHMRSLICEK CFSQPAVIRC  60
LDQKVSYCQG CQWHVRSCSA LGHRLQSLEP FSGCPSPTEF SRMWSSILEP SVSSLVNPSI  120
GSLPSLDDLI GSSYSMMSQN ITYIQNLSDQ SSFFSGDSKG CPHLILKLEE GEEDLCEGLN  180
LDNAPLNFDV GDDIICCSPQ EHIESDQTLP NGLLAYKNII SVTDSNCTTD NPLEATSTGQ  240
QECRSYHQSG PLQMNINIGL PLPTSPILFG QINPNIKGHE STAVDYQDCG MSTGFIMSDS  300
PWESNLEVGS PQTRNEAKLR YKEKKLKRTF GKQIRYASRK ARADTRKRVK GRFVKAGDNY  360
DYDPSSPTTN Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041046001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590127.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12
RefseqXP_022550036.10.0zinc finger protein CONSTANS-LIKE 12-like
SwissprotQ9LJ440.0COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBLA0A078JDC30.0A0A078JDC3_BRANA; BnaCnng43560D protein
STRINGBo1g105550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-178B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]