PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041276001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 247aa    MW: 27233.2 Da    PI: 9.4789
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041276001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS224.55e-691241120374
                 GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlq 209
                          +qGlQWp L++ LasRp++  s+RiTg+g+    s++ l +tg+rLa+fA++l +pfef+++v k  +  ++++L  +pgEa++V+++  
  GSBRNA2T00041276001   1 MQGLQWPGLFHILASRPRKLRSIRITGFGP----SSDVLASTGRRLADFAASLSLPFEFRPIVGKIGNVTDPSRLGRRPGEAVVVHWMQ- 85 
                          69****************************....9**************************988888888******************9. PP

                 GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                           hrl+d +++  +     L++v++l+P+++++veqe++++++    Fl rf+eal+yysalfd+l  +l++es er +vE+ +l+ ei+n
  GSBRNA2T00041276001  86 -HRLYDVTGNGID----ALEIVRRLRPNLITMVEQELSYDDGgggCFLGRFVEALHYYSALFDALGDGLGEESGERFTVEQIVLATEIRN 170
                          .****98888888....*******************9885443449******************************************** PP

                 GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          +v  + +        +++W+e l+++GF+pv+l+ + a+qa lll + +++gy++ ee+g+l lgWkd +L+++SaW+
  GSBRNA2T00041276001 171 IVGGKRR-------GVMRWKEELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAWQ 241
                          **87665.......4899***********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.1131221IPR005202Transcription factor GRAS
PfamPF035141.7E-661241IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MQGLQWPGLF HILASRPRKL RSIRITGFGP SSDVLASTGR RLADFAASLS LPFEFRPIVG  60
KIGNVTDPSR LGRRPGEAVV VHWMQHRLYD VTGNGIDALE IVRRLRPNLI TMVEQELSYD  120
DGGGGCFLGR FVEALHYYSA LFDALGDGLG EESGERFTVE QIVLATEIRN IVGGKRRGVM  180
RWKEELSRVG FRPVSLRGNP ATQAGLLLGM LPWNGYTLVE ENGTLRLGWK DLSLLTASAW  240
QSQPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-951240137377Protein SCARECROW
5b3h_D3e-951240137377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041276001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533820.0AK353382.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632002.11e-179PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ11e-152SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A0D3C0M61e-178A0A0D3C0M6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C1061e-178A0A3P6C106_BRAOL; Uncharacterized protein
STRINGBo4g143710.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-155GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]