PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041550001
Common NameGSBRNA2T00041550001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 508aa    MW: 57126.7 Da    PI: 5.0873
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041550001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.16.1e-26188242155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+++ Lt+e+v+SHLQkYRl
  GSBRNA2T00041550001 188 KARVVWSYELHQKFVNAVNQIGCDHKAGPKKILDLMNIPWLTRENVASHLQKYRL 242
                          68****************************************************8 PP
2Response_reg79.79.5e-27121181107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + +
  GSBRNA2T00041550001  12 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVMK 99 
                          89*********************.***************999999**********************5543.7***************** PP

                          HHHTTESEEEESS--HHHH CS
         Response_reg  89 alkaGakdflsKpfdpeel 107
                           ++ Ga d+l Kp+ ++el
  GSBRNA2T00041550001 100 GVQHGACDYLLKPIRMKEL 118
                          **************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-359131IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.3E-439133No hitNo description
SMARTSM004489.6E-3210122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.67511126IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.7E-2412119IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.41E-3113126No hitNo description
Gene3DG3DSA:1.10.10.602.1E-27185247IPR009057Homeodomain-like
SuperFamilySSF466893.23E-16186246IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-22188242IPR006447Myb domain, plants
PfamPF002491.8E-7190241IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MEKGFSPVGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LAREALRLLR ERKDGFDIVI  60
SDVNMPDMDG FKLLEHVGLE LDLPVIMMSV DGETSRVMKG VQHGACDYLL KPIRMKELKI  120
IWQHVLRKKL QEVRDIEGCC YDVGADWFTQ AQFLGGGEDV SFGKKRKDFD FEKKLFQDES  180
DQSSSSKKAR VVWSYELHQK FVNAVNQIGC DHKAGPKKIL DLMNIPWLTR ENVASHLQKY  240
RLYLSRLEKG KEIKCYSGGV KNMDSPPKDA EINSGHQSPG KSSSYAFLKA TETDPKQLAP  300
ASVSDPTSGV HMPPKAKKTR IGYDPPISSG VFDSLLPWND VPDPLESKPP ILYENSFLQQ  360
QPLPSQSSYV ANSAPSLMQE EMKPSYVNED EFLMPQDKNS TVILQDMDLS APFSSNATSN  420
TDSIPGSLNW ELPEAHHSGS LDTDLDFTWL HGEHFFANSG LQNFQFQDYT SSTSLLSEPP  480
PHLWYGNDRL PDPDEYTLMV DQGLFIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-18184247163ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and stems. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041550001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592266.10.0PREDICTED: two-component response regulator ARR11-like isoform X2
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A078GUQ60.0A0A078GUQ6_BRANA; Two-component response regulator
STRINGBo6g098710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  3. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]