PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041588001
Common NameGSBRNA2T00041588001, LOC106426277
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 977aa    MW: 108567 Da    PI: 5.954
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041588001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1167.71.8e-52121273117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwlk+ e++ iL+n++++elt++++++p+sgsl L+n++++++frkDG++w+kk+dg+++ E+he+LKvg+ve+l+cyYah+e++
  GSBRNA2T00041588001  12 QEaQTRWLKPPEVYFILKNHDRYELTHKAPHKPTSGSLCLFNKRVLKFFRKDGHHWRKKRDGRAIAEAHERLKVGNVEALNCYYAHGEHD 101
                          6669************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          p+fqrr++w+L+ e+++ivlvhy++v
  GSBRNA2T00041588001 102 PSFQRRIFWMLDLEYDHIVLVHYRDV 127
                          ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143771.5617133IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-6910128IPR005559CG-1 DNA-binding domain
PfamPF038595.6E-4513127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.0E-8430523IPR013783Immunoglobulin-like fold
CDDcd001021.66E-7438523No hitNo description
PfamPF018331.6E-9438521IPR002909IPT domain
SuperFamilySSF812961.37E-17438522IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.208.8E-15615711IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.512616708IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.58E-15618710IPR020683Ankyrin repeat-containing domain
CDDcd002041.40E-12636708No hitNo description
PfamPF127964.4E-7637709IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.686649681IPR002110Ankyrin repeat
SMARTSM002480.018649678IPR002110Ankyrin repeat
SMARTSM002481300688717IPR002110Ankyrin repeat
SMARTSM0001511762784IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525407.26E-12763859IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.547763789IPR000048IQ motif, EF-hand binding site
SMARTSM000150.51808830IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.334809835IPR000048IQ motif, EF-hand binding site
PfamPF006120.0042810829IPR000048IQ motif, EF-hand binding site
SMARTSM000156.5E-4831853IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.736832856IPR000048IQ motif, EF-hand binding site
PfamPF006121.2E-4833853IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 977 aa     Download sequence    Send to blast
MHSEYEIRTL NQEAQTRWLK PPEVYFILKN HDRYELTHKA PHKPTSGSLC LFNKRVLKFF  60
RKDGHHWRKK RDGRAIAEAH ERLKVGNVEA LNCYYAHGEH DPSFQRRIFW MLDLEYDHIV  120
LVHYRDVSDK KEGKQSSGTV LQFSLNPSAL FSSPSYSHHI GDSSTDVQQQ HSEEGSGSSY  180
EAIKRLEEQL SLGDDNNVVQ NESLDGLQFL DFSTDVDHLV PPPATVHQRP ESSSKLGRCY  240
GGYVGSQYNN VTTVGPPLYS QNESLDSLLS LEYIKDMNQL AQPAAGQQRP ESNRLDRSFG  300
GYIGTEYHPN NLMLLNNGSG GSGGSGDQKT GSWKDVLEAC GASIALNSQG STPSQANGLL  360
PVITQEDSNW DYGNQADQGT LLLPQELDSS LQLPPCYSEL VAPENNGDHS RLMVDEEQTG  420
PPLEQVMNDT VAYNQKFTIQ DISPEWGYAN ETTKVIIIGS FLCDPTESTW ACMFGNAQVP  480
FEIIKEGVIR CQAPPCGPGK VNLCITSGDG LSCSQIIEFE YRDKPDDRSC PKSSPDELLL  540
LVKFVQTLLL DRKGNIEPST DDDEWRRIID RIRDGTSTSS STVDWLLQEL LKDKLEAWLS  600
SRSQDKDQTS CSLSKQEQGI IHMVAGLGFD WALSPILGHG VSVDFRDGNG WSALHWAAQL  660
GSEKMVAALI ASGASAGAVT DPNTQDPVGK TPASIAASNG HKGLAGYLSE VALTTHLSSL  720
TLEETESSKE SAQAEAEITV KSIAGRSHPV NDDPQSLAAL KNAAEAAARI QAAFRAHSFR  780
KRQQKADMYA CLKEYGMYGD MSKQNARNYH SAALSIQKKY RGYKGRKEFL TKRQKAVMIQ  840
AHVRGYQTRK QYKVICWAVG MLDKVILRWR RKGVGLKGFR QDVESGEDSE DEDILRVFRK  900
QKVDGAVNEA FSRVMSMTRT LEARQQYHRV LTTYCKKKAE LGKTETLGIG GSGDYEDDDA  960
LFDIADMEYD HLFSLP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.198401e-172leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041588001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722452.10.0calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A078GUX00.0A0A078GUX0_BRANA; BnaC06g26850D protein
STRINGBo6g099030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]