PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041722001
Common NameGSBRNA2T00041722001, LOC106440118
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 297aa    MW: 32725.6 Da    PI: 8.2944
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041722001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.34.9e-19210244135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  GSBRNA2T00041722001 210 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 244
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.1E-951295IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.82204240IPR000679Zinc finger, GATA-type
SMARTSM004018.0E-15204258IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-14205266No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14208242IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.65E-14209257No hitNo description
PfamPF003206.9E-17210244IPR000679Zinc finger, GATA-type
PROSITE patternPS003440210235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MESVELSLTN METAVSADGA QNGDDFSVDD LLDFSSNDDV FFEDGAELET QRHKGVSVSL  60
NDETTLKRSN DFSTPCELAV PTDDLAELEW LSNFVDDSFT PYSAPTKKPV WLTGDRRHPL  120
TPVNAGSCFK APLPVKIRTK RPRTGVSLWF SRSPSLTNSS SSSATSSSSS GHSSPLWLSA  180
SEFLDEKAVK RQKKKKQFSS LEVQSQTRRC SHCGVQKTPQ WRAGPLGAKT LCNACGVRFK  240
SGRLLPEYRP ACSPTFSTEL HSNHHRKVIE MRQKKEMSGD ADKPGMNRTV QAVRSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.100450.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00404DAPTransfer from AT3G51080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041722001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896270.0AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013737173.10.0GATA transcription factor 6
SwissprotQ9SD381e-113GATA6_ARATH; GATA transcription factor 6
TrEMBLA0A078GWK00.0A0A078GWK0_BRANA; GATA transcription factor
STRINGBo7g100740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.12e-93GATA transcription factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]