PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00041814001

Common Name

GSBRNA2T00041814001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 1881aa MW: 207730 Da PI: 6.959

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00041814001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.8	4.4e-12	1133	1174	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e ++d +++G++ +k+Ia+++ +t +c+++++k GSBRNA2T00041814001 1133 PWTPEEKETFLDMLAMHGKD-FKKIASYLS-QKTTADCVEYYYK 1174 8***************99.*****.9********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.44E-15	1117	1178	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.052	1129	1180	IPR017884	SANT domain
SMART	SM00717	1.6E-11	1130	1178	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-9	1132	1174	IPR001005	SANT/Myb domain
CDD	cd00167	1.32E-8	1133	1175	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.2E-8	1133	1178	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.916	1335	1386	IPR017884	SANT domain
SMART	SM00717	3.0E-5	1336	1384	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.69E-8	1339	1386	IPR009057	Homeodomain-like
CDD	cd00167	1.19E-4	1340	1381	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1881 aa Download sequence Send to blast
MPQDHASWDR KELPRLRKRD RPSEPPPPFD SPPSPSSHRD FSRWGSASDF RRPNCNGKQG 60 GRYDFEEETS HGYTSSRSSA RMFENDYHRP LAPRGDWRYA RNFRDDRVPF SHKDWKGDTW 120 EMNNGSSRDF ERPFGVRNGR RSVDERPPHA SDTHTTLVNT WDPPPNFTHQ PEMCTPVRTL 180 KFANEQNNSD QRPSSLPIDP RPDRPSSENS YDNKECSTEN QCNGLMYARR LAYDNSLEPP 240 IRNTELEGTR KPHLKDMQDN RLRGVGDLDG AMKSGKESSL GAVGKLPVWP QDHTSWDRKE 300 LLRPRKRERP SEPPFDSPSS HHVPREYSRW GSGDFRRPNC HGKQGGRYQF AEETSHDYYR 360 QSAPRGDWRY TRNCRDDRVP LSQKEKCNTL DMSNSSSRAF ERPCGVRNGR RSVDERPLHA 420 SDAHTTLVNS WDSPNSTHQP DIEMCTPVQT LKFKNELKFS DQRPSLPIDP HSDCLSLSER 480 PSSENSYENK ECSTANQSNG LMYARRLAND NSLDPPIRHA ELEGTRKQLH LENMEDNRLR 540 GGLRGVSDLD GTMKSGKESS LGATGKPPVC SGSFSSQSSG FSHSSSFKSL GAGDSSDRKQ 600 KVIPKIVAAT QSSSGDATAC ATTTLSEEMI ARKKRLGWGE GLAKYENKKV DVNTTEDGTA 660 LLENGTGELR SLNKNITDES PTAAIAPDYG SPTTPSSVDC SSSPGFADKS SAKAAIGASD 720 VSNMCRSPSP VSSNYLERLP INIDELDDVS MERFGCLLSE LLGTDDPVIG DFCSAQLTSM 780 NRLLAWKGDI LKAVEMAESE IDLLENKQKA LKIEGRRQCR AVEPSSYVCQ GDENVFKKQE 840 NPCILGPKIV ASSVAETLVR DPVHQAVSAK APVEIFGDST GEVKSLTQAF ATAGSNEDIL 900 PIPSVRAVAS SKAINTSAVS SQEAIDLFSA DDMVSNEDLH CAKLLSTNKI YASESSGVFN 960 ELLPREFSSF DDSRFLGVRQ RQFDSHVKEK IADRIELLRA REKILLLRFK AFQFAWKKDL 1020 HQLALTKHQP KSNKRTEVLP NAKISGRLKL PQPLRLRLSS SAQRRDSVAS TTELVSYMKK 1080 LQNGTHLTPF RDILRMPAMI LDEKERARSR FISSNGMIED PCDVEKERTK INPWTPEEKE 1140 TFLDMLAMHG KDFKKIASYL SQKTTADCVE YYYKNHKSDS FGKIKKQRGY GKEGKHTYML 1200 APRKKWNREM GAASLDILGA VSIIASNAGK VASTRQISSK RITLRGSSSS SSLQHDGKYS 1260 EGCSHSFGFP RKRNLGADVV AVGPLSSEQI NSREECMYHL KIDPAAKKPR ISHSTHNENS 1320 NEDDDSCSEE SCEETGPIHW TDAERSAFIQ GFSLFGKNFA SLSSFVRTRS PDQCRVFFSK 1380 VRKCLGLECR QSGSANVSTS ASVDNANEGV GGSDLEDPCA MESIAAICND GVSAKIGLNS 1440 PTSPFNMNQD GANHSGSANV EAGLSRSEQD IGLTLLCLKD GTSLVNNACS NGDFPGVVSE 1500 PLVNNITGET QCQAAEQINS NDPLSMEIDE EGNLTPVAVS SDPLYCGASA IIVETPTESS 1560 HKGSGGEGAA LPNQSSKQQD GVNEAANRAI NNGLEAEAAP SSFRYPECLH HVPIEEDLVD 1620 VSVPQGDPSC HTESELSNSL VVQTNNMGWQ FSEVNLNLDR RLRIVGHAKP EQSGRLNATS 1680 TEPCQIPWRS FTQDPSRISR SKSDLIVNNQ HTGEGFSLKK CTSSATKPLT VFHKDGRSGH 1740 SRRHSFSLSD SERLDKNGDV KLFGTVLTAD DNGSKQKQNP GGSIRSSSTL SGDHQYINQQ 1800 HLQNVPITSY SFWDGSRIQT VLTSLPESAK LLASYPEALS THLKQQVVSS KEIQLDVSGI 1860 LSFGKHIEER ADVSSGKDER *

Sequence ? help Back to Top

Protein Sequence Length: 1881 aa Download sequence Send to blast

MPQDHASWDR KELPRLRKRD RPSEPPPPFD SPPSPSSHRD FSRWGSASDF RRPNCNGKQG  60
GRYDFEEETS HGYTSSRSSA RMFENDYHRP LAPRGDWRYA RNFRDDRVPF SHKDWKGDTW  120
EMNNGSSRDF ERPFGVRNGR RSVDERPPHA SDTHTTLVNT WDPPPNFTHQ PEMCTPVRTL  180
KFANEQNNSD QRPSSLPIDP RPDRPSSENS YDNKECSTEN QCNGLMYARR LAYDNSLEPP  240
IRNTELEGTR KPHLKDMQDN RLRGVGDLDG AMKSGKESSL GAVGKLPVWP QDHTSWDRKE  300
LLRPRKRERP SEPPFDSPSS HHVPREYSRW GSGDFRRPNC HGKQGGRYQF AEETSHDYYR  360
QSAPRGDWRY TRNCRDDRVP LSQKEKCNTL DMSNSSSRAF ERPCGVRNGR RSVDERPLHA  420
SDAHTTLVNS WDSPNSTHQP DIEMCTPVQT LKFKNELKFS DQRPSLPIDP HSDCLSLSER  480
PSSENSYENK ECSTANQSNG LMYARRLAND NSLDPPIRHA ELEGTRKQLH LENMEDNRLR  540
GGLRGVSDLD GTMKSGKESS LGATGKPPVC SGSFSSQSSG FSHSSSFKSL GAGDSSDRKQ  600
KVIPKIVAAT QSSSGDATAC ATTTLSEEMI ARKKRLGWGE GLAKYENKKV DVNTTEDGTA  660
LLENGTGELR SLNKNITDES PTAAIAPDYG SPTTPSSVDC SSSPGFADKS SAKAAIGASD  720
VSNMCRSPSP VSSNYLERLP INIDELDDVS MERFGCLLSE LLGTDDPVIG DFCSAQLTSM  780
NRLLAWKGDI LKAVEMAESE IDLLENKQKA LKIEGRRQCR AVEPSSYVCQ GDENVFKKQE  840
NPCILGPKIV ASSVAETLVR DPVHQAVSAK APVEIFGDST GEVKSLTQAF ATAGSNEDIL  900
PIPSVRAVAS SKAINTSAVS SQEAIDLFSA DDMVSNEDLH CAKLLSTNKI YASESSGVFN  960
ELLPREFSSF DDSRFLGVRQ RQFDSHVKEK IADRIELLRA REKILLLRFK AFQFAWKKDL  1020
HQLALTKHQP KSNKRTEVLP NAKISGRLKL PQPLRLRLSS SAQRRDSVAS TTELVSYMKK  1080
LQNGTHLTPF RDILRMPAMI LDEKERARSR FISSNGMIED PCDVEKERTK INPWTPEEKE  1140
TFLDMLAMHG KDFKKIASYL SQKTTADCVE YYYKNHKSDS FGKIKKQRGY GKEGKHTYML  1200
APRKKWNREM GAASLDILGA VSIIASNAGK VASTRQISSK RITLRGSSSS SSLQHDGKYS  1260
EGCSHSFGFP RKRNLGADVV AVGPLSSEQI NSREECMYHL KIDPAAKKPR ISHSTHNENS  1320
NEDDDSCSEE SCEETGPIHW TDAERSAFIQ GFSLFGKNFA SLSSFVRTRS PDQCRVFFSK  1380
VRKCLGLECR QSGSANVSTS ASVDNANEGV GGSDLEDPCA MESIAAICND GVSAKIGLNS  1440
PTSPFNMNQD GANHSGSANV EAGLSRSEQD IGLTLLCLKD GTSLVNNACS NGDFPGVVSE  1500
PLVNNITGET QCQAAEQINS NDPLSMEIDE EGNLTPVAVS SDPLYCGASA IIVETPTESS  1560
HKGSGGEGAA LPNQSSKQQD GVNEAANRAI NNGLEAEAAP SSFRYPECLH HVPIEEDLVD  1620
VSVPQGDPSC HTESELSNSL VVQTNNMGWQ FSEVNLNLDR RLRIVGHAKP EQSGRLNATS  1680
TEPCQIPWRS FTQDPSRISR SKSDLIVNNQ HTGEGFSLKK CTSSATKPLT VFHKDGRSGH  1740
SRRHSFSLSD SERLDKNGDV KLFGTVLTAD DNGSKQKQNP GGSIRSSSTL SGDHQYINQQ  1800
HLQNVPITSY SFWDGSRIQT VLTSLPESAK LLASYPEALS THLKQQVVSS KEIQLDVSGI  1860
LSFGKHIEER ADVSSGKDER *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-17	1091	1181	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-17	1091	1181	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10239	0.0	microspore-derived embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00041814001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013705592.1	0.0	uncharacterized protein LOC106409513 isoform X1
TrEMBL	A0A078GRF6	0.0	A0A078GRF6_BRANA; BnaC07g32760D protein
STRING	Bo7g101470.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5260	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]